Variant report

Variant	rs73853285
Chromosome Location	chr4:147913997-147913998
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10519843	1.00[EUR][1000 genomes]
rs10519858	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1370302	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1437260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022075	1.00[EUR][1000 genomes]
rs17022182	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022275	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28694531	1.00[EUR][1000 genomes]
rs4301138	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55789811	1.00[EUR][1000 genomes]
rs55862662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56919404	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56939845	1.00[EUR][1000 genomes]
rs59033491	1.00[EUR][1000 genomes]
rs59895059	1.00[EUR][1000 genomes]
rs6537442	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6811983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6813219	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6840129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6850704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6851748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6857268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852704	1.00[EUR][1000 genomes]
rs73852707	1.00[EUR][1000 genomes]
rs73852718	1.00[EUR][1000 genomes]
rs73852721	1.00[EUR][1000 genomes]
rs73852722	1.00[EUR][1000 genomes]
rs73852734	1.00[EUR][1000 genomes]
rs73852736	1.00[EUR][1000 genomes]
rs73852787	1.00[EUR][1000 genomes]
rs73852788	1.00[EUR][1000 genomes]
rs73852789	1.00[EUR][1000 genomes]
rs73852790	1.00[EUR][1000 genomes]
rs73852791	1.00[EUR][1000 genomes]
rs73852795	1.00[EUR][1000 genomes]
rs73852796	1.00[EUR][1000 genomes]
rs73852797	1.00[EUR][1000 genomes]
rs73853259	1.00[EUR][1000 genomes]
rs73853275	1.00[EUR][1000 genomes]
rs73853277	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73853283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73855102	1.00[EUR][1000 genomes]
rs73855650	1.00[EUR][1000 genomes]
rs73856354	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147913400-147925200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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