Variant report

Variant	rs73852718
Chromosome Location	chr4:147765807-147765808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10519843	1.00[EUR][1000 genomes]
rs10519858	1.00[EUR][1000 genomes]
rs1370302	1.00[EUR][1000 genomes]
rs1437260	1.00[EUR][1000 genomes]
rs17022075	1.00[EUR][1000 genomes]
rs17022182	1.00[EUR][1000 genomes]
rs17022229	1.00[EUR][1000 genomes]
rs17022275	1.00[EUR][1000 genomes]
rs17022292	1.00[EUR][1000 genomes]
rs28694531	1.00[EUR][1000 genomes]
rs4301138	1.00[EUR][1000 genomes]
rs55789811	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55862662	1.00[EUR][1000 genomes]
rs56919404	1.00[EUR][1000 genomes]
rs56939845	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59033491	1.00[EUR][1000 genomes]
rs59895059	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6537442	1.00[EUR][1000 genomes]
rs6811983	1.00[EUR][1000 genomes]
rs6813219	1.00[EUR][1000 genomes]
rs6825623	1.00[EUR][1000 genomes]
rs6830203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6840129	1.00[EUR][1000 genomes]
rs6850704	1.00[EUR][1000 genomes]
rs6851748	1.00[EUR][1000 genomes]
rs6857268	1.00[EUR][1000 genomes]
rs6857438	1.00[EUR][1000 genomes]
rs73852704	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73852707	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852722	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852734	1.00[EUR][1000 genomes]
rs73852736	1.00[EUR][1000 genomes]
rs73852787	1.00[EUR][1000 genomes]
rs73852788	1.00[EUR][1000 genomes]
rs73852789	1.00[EUR][1000 genomes]
rs73852790	1.00[EUR][1000 genomes]
rs73852791	1.00[EUR][1000 genomes]
rs73852795	1.00[EUR][1000 genomes]
rs73852796	1.00[EUR][1000 genomes]
rs73852797	1.00[EUR][1000 genomes]
rs73852895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853259	1.00[EUR][1000 genomes]
rs73853275	1.00[EUR][1000 genomes]
rs73853277	1.00[EUR][1000 genomes]
rs73853283	1.00[EUR][1000 genomes]
rs73853285	1.00[EUR][1000 genomes]
rs73853295	1.00[EUR][1000 genomes]
rs73855102	1.00[EUR][1000 genomes]
rs73855650	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73856354	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv880239	chr4:147666797-147779999	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147764800-147773600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:147765400-147766000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:147765800-147766200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:147765800-147766400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:147765800-147766400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:147765800-147767000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links