Variant report

Variant	rs73853359
Chromosome Location	chr3:111928109-111928110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16859301	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16859316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56275603	0.90[EUR][1000 genomes]
rs56284645	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59653496	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6782851	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73853324	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853366	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73853380	0.80[EUR][1000 genomes]
rs73853381	0.80[EUR][1000 genomes]
rs73853383	0.80[EUR][1000 genomes]
rs7639219	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111913200-111930000	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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