Variant report

Variant	rs16859301
Chromosome Location	chr3:111885414-111885415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs13100905	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs1492488	1.00[CEU][hapmap]
rs1492490	1.00[CEU][hapmap]
rs16859182	1.00[CEU][hapmap]
rs16859186	1.00[CEU][hapmap]
rs16859188	1.00[CEU][hapmap]
rs16859190	1.00[CEU][hapmap]
rs16859261	1.00[CEU][hapmap]
rs16859316	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs192095	1.00[CEU][hapmap]
rs340153	1.00[CEU][hapmap]
rs340155	1.00[CEU][hapmap]
rs340157	1.00[CEU][hapmap]
rs340158	1.00[CEU][hapmap]
rs340173	1.00[CEU][hapmap]
rs340174	1.00[CEU][hapmap]
rs4274720	1.00[CEU][hapmap]
rs55681719	0.90[AFR][1000 genomes]
rs55920270	0.90[AFR][1000 genomes]
rs56275603	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56284645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59653496	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61645341	0.93[AFR][1000 genomes]
rs6782851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6790318	1.00[CEU][hapmap]
rs6793177	1.00[CEU][hapmap]
rs6793189	1.00[CEU][hapmap]
rs6803848	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs73853324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853329	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853359	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73853380	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73853381	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73853383	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7626450	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs7631566	1.00[CEU][hapmap]
rs7639219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7649128	0.80[AFR][1000 genomes]
rs7649379	1.00[CEU][hapmap]
rs9288936	1.00[CEU][hapmap]
rs9814494	1.00[CEU][hapmap]
rs9816581	1.00[CEU][hapmap]
rs9822776	1.00[CEU][hapmap]
rs9847052	1.00[CEU][hapmap]
rs9867907	1.00[CEU][hapmap]
rs9874686	1.00[CEU][hapmap]
rs9880044	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv3323712	chr3:111861311-111890479	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111876400-111891400	Weak transcription	Right Ventricle	heart
2	chr3:111885400-111887400	Weak transcription	Esophagus	oesophagus
3	chr3:111885400-111894000	Weak transcription	Gastric	stomach
4	chr3:111885400-111897200	Weak transcription	Pancreas	Pancrea
5	chr3:111885400-111904200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:111885400-111904600	Weak transcription	Left Ventricle	heart

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