Variant report

Variant	rs6803848
Chromosome Location	chr3:111857569-111857570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111851024..111853542-chr3:111855899..111858560,2	K562	blood:

Variant related genes	Relation type
ENSG00000174500	Chromatin interaction
ENSG00000261488	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs13100905	1.00[CEU][hapmap]
rs1492488	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1492490	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16859182	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16859186	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16859188	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16859190	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16859259	0.88[EUR][1000 genomes]
rs16859261	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16859301	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs16859316	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs186866	0.96[EUR][1000 genomes]
rs192095	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs28722116	0.96[EUR][1000 genomes]
rs340152	0.96[EUR][1000 genomes]
rs340153	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340155	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340157	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340158	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340171	0.96[EUR][1000 genomes]
rs340173	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340174	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs34879456	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4274720	1.00[CEU][hapmap]
rs4682083	0.92[EUR][1000 genomes]
rs59459588	0.96[EUR][1000 genomes]
rs61645341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6790318	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6790375	0.96[EUR][1000 genomes]
rs6793177	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6793189	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7617986	1.00[EUR][1000 genomes]
rs7626450	1.00[CEU][hapmap]
rs7631566	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7649379	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9288936	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9814494	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9816581	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9822776	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9847052	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9867907	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9874686	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9880044	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9881049	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111852200-111857600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:111852200-111863400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111852600-111857600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:111853400-111867400	Weak transcription	Gastric	stomach
5	chr3:111854600-111858000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:111854800-111857600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:111854800-111857800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:111855000-111857600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:111855000-111858000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:111855200-111858000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:111855400-111857600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:111855400-111858000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:111856200-111857800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr3:111856200-111860200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:111856200-111867400	Weak transcription	Thymus	Thymus
16	chr3:111856200-111867600	Weak transcription	Left Ventricle	heart
17	chr3:111856400-111857800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr3:111856400-111861800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:111856400-111862400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:111856600-111857600	Enhancers	GM12878-XiMat	blood
21	chr3:111857000-111858400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr3:111857000-111861000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:111857200-111860200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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