Variant report

Variant	rs9881049
Chromosome Location	chr3:111805594-111805595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:50134972..50135639-chr3:111805318..111805831,2	Hela-S3	cervix:
2	chr15:59225042..59225969-chr3:111804939..111805795,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction
ENSG00000139644	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1492488	0.92[EUR][1000 genomes]
rs1492490	0.92[EUR][1000 genomes]
rs16859182	0.96[EUR][1000 genomes]
rs16859186	0.96[EUR][1000 genomes]
rs16859188	0.96[EUR][1000 genomes]
rs16859190	0.96[EUR][1000 genomes]
rs16859259	0.81[EUR][1000 genomes]
rs16859261	0.92[EUR][1000 genomes]
rs186866	0.96[EUR][1000 genomes]
rs192095	0.96[EUR][1000 genomes]
rs28722116	0.96[EUR][1000 genomes]
rs340152	0.96[EUR][1000 genomes]
rs340153	0.96[EUR][1000 genomes]
rs340155	0.96[EUR][1000 genomes]
rs340157	0.96[EUR][1000 genomes]
rs340158	0.96[EUR][1000 genomes]
rs340171	0.96[EUR][1000 genomes]
rs340173	0.96[EUR][1000 genomes]
rs340174	0.96[EUR][1000 genomes]
rs34879456	0.92[EUR][1000 genomes]
rs4682083	0.92[EUR][1000 genomes]
rs57344127	0.81[EUR][1000 genomes]
rs59459588	0.96[EUR][1000 genomes]
rs61645341	0.92[EUR][1000 genomes]
rs6790318	0.96[EUR][1000 genomes]
rs6790375	0.96[EUR][1000 genomes]
rs6793177	0.96[EUR][1000 genomes]
rs6793189	0.96[EUR][1000 genomes]
rs6803848	0.92[EUR][1000 genomes]
rs7617986	0.92[EUR][1000 genomes]
rs7631566	0.92[EUR][1000 genomes]
rs7649379	0.92[EUR][1000 genomes]
rs9288936	0.96[EUR][1000 genomes]
rs9814494	0.96[EUR][1000 genomes]
rs9816581	0.96[EUR][1000 genomes]
rs9822776	0.96[EUR][1000 genomes]
rs9847052	0.96[EUR][1000 genomes]
rs9867907	0.96[EUR][1000 genomes]
rs9874686	0.96[EUR][1000 genomes]
rs9880044	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755927	chr3:111794310-111834310	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111804600-111805600	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr3:111804600-111805800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:111804600-111805800	Active TSS	Brain Anterior Caudate	brain
4	chr3:111804600-111805800	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr3:111804600-111806000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr3:111804600-111806000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:111804600-111806000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:111804600-111806000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:111804600-111806000	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr3:111804600-111806000	Active TSS	Brain Cingulate Gyrus	brain
11	chr3:111804600-111806000	Active TSS	Fetal Kidney	kidney
12	chr3:111804600-111806000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr3:111804600-111806400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:111804600-111806600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:111804600-111806800	Active TSS	Rectal Smooth Muscle	rectum
16	chr3:111804800-111805600	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr3:111804800-111805600	Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr3:111804800-111805600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:111804800-111805600	Active TSS	Muscle Satellite Cultured Cells	--
20	chr3:111804800-111805600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:111804800-111805800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
22	chr3:111804800-111805800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
23	chr3:111804800-111805800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
24	chr3:111804800-111805800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:111804800-111805800	Flanking Active TSS	Liver	Liver
26	chr3:111804800-111805800	Active TSS	Brain Angular Gyrus	brain
27	chr3:111804800-111805800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:111804800-111805800	Active TSS	Colon Smooth Muscle	Colon
29	chr3:111804800-111805800	Active TSS	Esophagus	oesophagus
30	chr3:111804800-111805800	Active TSS	Left Ventricle	heart
31	chr3:111804800-111805800	Active TSS	Lung	lung
32	chr3:111804800-111805800	Active TSS	Ovary	ovary
33	chr3:111804800-111805800	Active TSS	Psoas Muscle	Psoas
34	chr3:111804800-111805800	Enhancers	Spleen	Spleen
35	chr3:111804800-111805800	Active TSS	HSMM	muscle
36	chr3:111804800-111805800	Active TSS	HSMMtube	muscle
37	chr3:111804800-111806000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:111804800-111806000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr3:111804800-111806000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
40	chr3:111804800-111806000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:111804800-111806000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
42	chr3:111804800-111806000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
43	chr3:111804800-111806000	Flanking Bivalent TSS/Enh	Placenta	Placenta
44	chr3:111804800-111806000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
45	chr3:111804800-111806000	Active TSS	NHDF-Ad	bronchial
46	chr3:111804800-111806200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr3:111804800-111806200	Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr3:111804800-111806200	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr3:111804800-111806200	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr3:111804800-111806200	Active TSS	NHLF	lung

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