Variant report

Variant	rs7649379
Chromosome Location	chr3:111840513-111840514
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111833855..111836501-chr3:111839924..111841508,2	MCF-7	breast:
2	chr3:111833809..111835627-chr3:111838661..111841118,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs13100905	1.00[CEU][hapmap]
rs1492488	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859188	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859214	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16859217	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16859220	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16859233	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16859259	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859301	1.00[CEU][hapmap]
rs16859316	1.00[CEU][hapmap]
rs186866	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs192095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28722116	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340152	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340171	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340175	1.00[ASN][1000 genomes]
rs34879456	1.00[EUR][1000 genomes]
rs4274720	1.00[CEU][hapmap]
rs4682083	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57344127	1.00[ASN][1000 genomes]
rs59459588	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61645341	1.00[EUR][1000 genomes]
rs6438029	0.86[CHD][hapmap]
rs6438030	0.86[CHD][hapmap]
rs6787297	0.86[CHD][hapmap]
rs6790318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790375	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803848	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7617986	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620996	0.86[CHD][hapmap]
rs7626450	1.00[CEU][hapmap]
rs7631566	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814494	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9816581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847052	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880147	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9880242	0.86[ASW][hapmap]
rs9881049	0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7649379	AHSP	trans	lymphoblastoid	seeQTL

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111810400-111852000	Weak transcription	Esophagus	oesophagus
2	chr3:111812000-111844000	Weak transcription	Colonic Mucosa	Colon
3	chr3:111812000-111845600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:111812200-111853000	Weak transcription	Right Ventricle	heart
5	chr3:111819600-111847800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:111821200-111843600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:111821400-111843600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:111822000-111844600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:111825800-111844400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:111830600-111853200	Weak transcription	Lung	lung
11	chr3:111830800-111845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:111831400-111843000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:111832000-111844600	Weak transcription	Hela-S3	cervix
14	chr3:111832400-111840600	Enhancers	Primary B cells from cord blood	blood
15	chr3:111832600-111841600	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:111833200-111844000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:111834200-111853800	Weak transcription	Fetal Intestine Small	intestine
18	chr3:111834400-111848000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr3:111834600-111841600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:111835200-111840800	Strong transcription	NH-A	brain
21	chr3:111835800-111840600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr3:111835800-111841000	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr3:111835800-111844400	Weak transcription	Fetal Heart	heart
24	chr3:111835800-111849600	Weak transcription	Small Intestine	intestine
25	chr3:111836000-111841200	Enhancers	Primary hematopoietic stem cells	blood
26	chr3:111836200-111840800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr3:111836200-111843600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:111836200-111844200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr3:111836200-111845000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:111836200-111849200	Weak transcription	Aorta	Aorta
31	chr3:111836600-111846400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr3:111837000-111840800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr3:111837400-111841200	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr3:111837800-111842200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:111838000-111840600	Strong transcription	NHEK	skin
36	chr3:111838200-111840800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr3:111838200-111840800	Genic enhancers	Fetal Thymus	thymus
38	chr3:111838400-111845400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:111838600-111840600	Enhancers	Primary T cells fromperipheralblood	blood
40	chr3:111838600-111840800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr3:111838600-111842000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:111838800-111840800	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr3:111838800-111843800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr3:111838800-111844400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr3:111838800-111845400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:111839000-111843600	Weak transcription	Fetal Muscle Leg	muscle
47	chr3:111839000-111843800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr3:111839000-111843800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr3:111839000-111844200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr3:111839000-111845200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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