Variant report

Variant	rs7626450
Chromosome Location	chr3:112000812-112000813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:111993821..111999199-chr3:111999738..112003552,5	K562	blood:
2	chr3:111991351..111994279-chr3:111999124..112001304,2	K562	blood:
3	chr3:111994958..111997172-chr3:111998544..112001325,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs13100905	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1492488	1.00[CEU][hapmap]
rs1492490	1.00[CEU][hapmap]
rs16859182	1.00[CEU][hapmap]
rs16859186	1.00[CEU][hapmap]
rs16859188	1.00[CEU][hapmap]
rs16859190	1.00[CEU][hapmap]
rs16859261	1.00[CEU][hapmap]
rs16859301	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs16859316	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs192095	1.00[CEU][hapmap]
rs340153	1.00[CEU][hapmap]
rs340155	1.00[CEU][hapmap]
rs340157	1.00[CEU][hapmap]
rs340158	1.00[CEU][hapmap]
rs340173	1.00[CEU][hapmap]
rs340174	1.00[CEU][hapmap]
rs4274720	1.00[CEU][hapmap]
rs56275603	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56284645	0.83[EUR][1000 genomes]
rs6790318	1.00[CEU][hapmap]
rs6793177	1.00[CEU][hapmap]
rs6793189	1.00[CEU][hapmap]
rs6803848	1.00[CEU][hapmap]
rs73853366	0.83[EUR][1000 genomes]
rs73853380	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73853381	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73853383	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7631566	1.00[CEU][hapmap]
rs7649379	1.00[CEU][hapmap]
rs9288936	1.00[CEU][hapmap]
rs9814494	1.00[CEU][hapmap]
rs9816581	1.00[CEU][hapmap]
rs9822776	1.00[CEU][hapmap]
rs9847052	1.00[CEU][hapmap]
rs9867907	1.00[CEU][hapmap]
rs9874686	1.00[CEU][hapmap]
rs9880044	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv3949	chr3:111998512-112044060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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