Variant report

Variant	rs16859261
Chromosome Location	chr3:111842431-111842432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs13100905	1.00[CEU][hapmap]
rs1492488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859188	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859214	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16859217	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16859220	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16859233	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16859259	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859301	1.00[CEU][hapmap]
rs16859316	1.00[CEU][hapmap]
rs186866	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs192095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28722116	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340152	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340171	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340175	1.00[ASN][1000 genomes]
rs34879456	1.00[EUR][1000 genomes]
rs4274720	1.00[CEU][hapmap]
rs4682083	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57344127	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59459588	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61645341	1.00[EUR][1000 genomes]
rs6438029	0.86[CHD][hapmap]
rs6438030	0.86[CHD][hapmap]
rs6787297	0.86[CHD][hapmap]
rs6790318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790375	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803848	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7617986	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620996	0.86[CHD][hapmap]
rs7626450	1.00[CEU][hapmap]
rs7631566	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814494	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9816581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847052	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881049	0.92[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111810400-111852000	Weak transcription	Esophagus	oesophagus
2	chr3:111812000-111844000	Weak transcription	Colonic Mucosa	Colon
3	chr3:111812000-111845600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:111812200-111853000	Weak transcription	Right Ventricle	heart
5	chr3:111819600-111847800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:111821200-111843600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:111821400-111843600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:111822000-111844600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:111825800-111844400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:111830600-111853200	Weak transcription	Lung	lung
11	chr3:111830800-111845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:111831400-111843000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:111832000-111844600	Weak transcription	Hela-S3	cervix
14	chr3:111833200-111844000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:111834200-111853800	Weak transcription	Fetal Intestine Small	intestine
16	chr3:111834400-111848000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:111835800-111844400	Weak transcription	Fetal Heart	heart
18	chr3:111835800-111849600	Weak transcription	Small Intestine	intestine
19	chr3:111836200-111843600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:111836200-111844200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr3:111836200-111845000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:111836200-111849200	Weak transcription	Aorta	Aorta
23	chr3:111836600-111846400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:111838400-111845400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:111838800-111843800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr3:111838800-111844400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr3:111838800-111845400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:111839000-111843600	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:111839000-111843800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:111839000-111843800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr3:111839000-111844200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr3:111839000-111845200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:111839000-111845200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:111839000-111845600	Weak transcription	Adipose Nuclei	Adipose
35	chr3:111839000-111853000	Weak transcription	Left Ventricle	heart
36	chr3:111839200-111843600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:111839200-111843800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr3:111839400-111844000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:111839600-111843600	Weak transcription	HSMMtube	muscle
40	chr3:111839600-111845400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr3:111839600-111847400	Weak transcription	HMEC	breast
42	chr3:111840600-111843000	Genic enhancers	Primary B cells from cord blood	blood
43	chr3:111840600-111845400	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr3:111840800-111842800	Strong transcription	Fetal Thymus	thymus
45	chr3:111840800-111843600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:111840800-111844000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr3:111840800-111844200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr3:111840800-111844400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr3:111840800-111845400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr3:111840800-111847000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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