Variant report

Variant	rs16859316
Chromosome Location	chr3:111922259-111922260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111916552..111919160-chr3:111921905..111924645,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs13100905	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1492488	1.00[CEU][hapmap]
rs1492490	1.00[CEU][hapmap]
rs16859182	1.00[CEU][hapmap]
rs16859186	1.00[CEU][hapmap]
rs16859188	1.00[CEU][hapmap]
rs16859190	1.00[CEU][hapmap]
rs16859261	1.00[CEU][hapmap]
rs16859301	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs192095	1.00[CEU][hapmap]
rs340153	1.00[CEU][hapmap]
rs340155	1.00[CEU][hapmap]
rs340157	1.00[CEU][hapmap]
rs340158	1.00[CEU][hapmap]
rs340173	1.00[CEU][hapmap]
rs340174	1.00[CEU][hapmap]
rs4274720	1.00[CEU][hapmap]
rs55681719	0.90[AFR][1000 genomes]
rs55920270	0.90[AFR][1000 genomes]
rs56275603	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs56284645	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59653496	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61645341	0.93[AFR][1000 genomes]
rs6782851	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6790318	1.00[CEU][hapmap]
rs6793177	1.00[CEU][hapmap]
rs6793189	1.00[CEU][hapmap]
rs6803848	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs73853324	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853366	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73853380	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73853381	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73853383	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7626450	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs7631566	1.00[CEU][hapmap]
rs7639219	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7649128	0.80[AFR][1000 genomes]
rs7649379	1.00[CEU][hapmap]
rs9288936	1.00[CEU][hapmap]
rs9814494	1.00[CEU][hapmap]
rs9816581	1.00[CEU][hapmap]
rs9822776	1.00[CEU][hapmap]
rs9847052	1.00[CEU][hapmap]
rs9867907	1.00[CEU][hapmap]
rs9874686	1.00[CEU][hapmap]
rs9880044	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111913000-111923200	Weak transcription	Pancreas	Pancrea
2	chr3:111913200-111930000	Weak transcription	Left Ventricle	heart
3	chr3:111915400-111923400	Weak transcription	Aorta	Aorta
4	chr3:111919000-111922600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:111919600-111925200	Weak transcription	Fetal Heart	heart

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