Variant report

Variant	rs73862804
Chromosome Location	chr3:101220079-101220080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101217352..101220548-chr3:101224005..101228442,4	K562	blood:
2	chr3:101218206..101221093-chr3:101229989..101232899,2	K562	blood:

Variant related genes	Relation type
ENSG00000138468	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55858411	1.00[AMR][1000 genomes]
rs56041581	1.00[AMR][1000 genomes]
rs56079188	1.00[AMR][1000 genomes]
rs57379026	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60380997	1.00[AMR][1000 genomes]
rs73863044	1.00[AMR][1000 genomes]
rs73863048	1.00[AMR][1000 genomes]
rs73863098	1.00[AMR][1000 genomes]
rs73863359	1.00[AMR][1000 genomes]
rs73865623	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803745	chr3:101196030-101230330	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101171200-101230400	Weak transcription	Brain Substantia Nigra	brain
2	chr3:101186400-101223600	Weak transcription	Gastric	stomach
3	chr3:101193200-101230400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:101198400-101220600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:101198600-101231000	Weak transcription	GM12878-XiMat	blood
6	chr3:101202200-101230800	Weak transcription	Psoas Muscle	Psoas
7	chr3:101204000-101231200	Weak transcription	Esophagus	oesophagus
8	chr3:101204200-101223800	Weak transcription	NH-A	brain
9	chr3:101204200-101227600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:101204200-101228400	Weak transcription	NHDF-Ad	bronchial
11	chr3:101204400-101225600	Weak transcription	K562	blood
12	chr3:101204400-101230800	Weak transcription	Right Ventricle	heart
13	chr3:101204600-101230800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:101205600-101220600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:101206800-101224800	Weak transcription	Fetal Heart	heart
16	chr3:101207000-101220400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:101207200-101221800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:101207800-101231000	Weak transcription	Aorta	Aorta
19	chr3:101209600-101227800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:101209800-101220600	Weak transcription	HSMMtube	muscle
21	chr3:101210000-101231200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:101211200-101231000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:101211600-101230400	Weak transcription	Placenta	Placenta
24	chr3:101211800-101220400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:101211800-101221800	Weak transcription	HepG2	liver
26	chr3:101211800-101223600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:101211800-101227400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:101211800-101228200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:101211800-101229600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr3:101211800-101230400	Weak transcription	Liver	Liver
31	chr3:101211800-101230800	Weak transcription	Lung	lung
32	chr3:101211800-101231400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:101212000-101221000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:101212000-101229400	Weak transcription	Fetal Brain Male	brain
35	chr3:101212000-101230000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr3:101212000-101230200	Weak transcription	Adipose Nuclei	Adipose
37	chr3:101212200-101220400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr3:101212200-101220800	Weak transcription	HUVEC	blood vessel
39	chr3:101212200-101221000	Weak transcription	Small Intestine	intestine
40	chr3:101212200-101223200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr3:101212200-101223600	Weak transcription	Fetal Intestine Large	intestine
42	chr3:101212200-101228200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:101212200-101229800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr3:101212200-101230000	Weak transcription	Colon Smooth Muscle	Colon
45	chr3:101212200-101230000	Weak transcription	Fetal Brain Female	brain
46	chr3:101212200-101230200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:101212200-101230200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr3:101212200-101230600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr3:101212200-101230800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:101212200-101230800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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