Variant report

Variant	rs73863098
Chromosome Location	chr3:101106092-101106093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101105681..101107819-chr3:101109398..101112235,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55858411	1.00[AMR][1000 genomes]
rs56041581	1.00[AMR][1000 genomes]
rs56079188	1.00[AMR][1000 genomes]
rs57379026	1.00[AMR][1000 genomes]
rs59044339	1.00[AFR][1000 genomes]
rs60380997	1.00[AMR][1000 genomes]
rs60537707	1.00[AFR][1000 genomes]
rs6785823	0.86[AFR][1000 genomes]
rs6795771	0.86[AFR][1000 genomes]
rs73862804	1.00[AMR][1000 genomes]
rs73863036	0.86[AFR][1000 genomes]
rs73863044	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73863048	1.00[AMR][1000 genomes]
rs73863083	1.00[AFR][1000 genomes]
rs73863359	1.00[AMR][1000 genomes]
rs73865623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1003475	chr3:101005238-101120030	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101039800-101106600	Weak transcription	Thymus	Thymus
2	chr3:101045800-101110800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:101084600-101106600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:101085000-101106600	Weak transcription	Fetal Brain Female	brain
5	chr3:101085600-101106800	Weak transcription	Dnd41	blood
6	chr3:101085600-101137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:101090600-101106600	Weak transcription	Fetal Lung	lung
8	chr3:101091000-101106800	Weak transcription	Fetal Thymus	thymus
9	chr3:101096800-101106400	Weak transcription	Aorta	Aorta
10	chr3:101096800-101106600	Weak transcription	Brain Substantia Nigra	brain
11	chr3:101096800-101111600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:101097600-101108000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:101099000-101108000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:101099000-101110400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr3:101099000-101114600	Weak transcription	K562	blood
16	chr3:101099600-101106800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:101099600-101107000	Weak transcription	Primary B cells from cord blood	blood
18	chr3:101099600-101107000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:101099600-101107200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:101099600-101107800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr3:101100200-101106600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:101100800-101106400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:101100800-101108200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:101101200-101106600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:101101200-101108000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:101101600-101106200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr3:101102000-101106200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:101102000-101106800	Enhancers	Left Ventricle	heart
29	chr3:101102600-101106800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:101102600-101107600	Strong transcription	Primary T cells from cord blood	blood
31	chr3:101103400-101106600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr3:101103600-101106400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:101103600-101106400	Weak transcription	Fetal Intestine Large	intestine
34	chr3:101104200-101106200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr3:101104200-101106600	Enhancers	Right Atrium	heart
36	chr3:101104200-101106800	Enhancers	Right Ventricle	heart
37	chr3:101104600-101106600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:101104600-101108000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr3:101104800-101106600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr3:101105000-101106800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr3:101105200-101106400	Weak transcription	Colonic Mucosa	Colon
42	chr3:101105200-101106400	Strong transcription	Fetal Intestine Small	intestine
43	chr3:101105200-101106600	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr3:101105400-101106200	Enhancers	Fetal Muscle Leg	muscle
45	chr3:101105400-101106400	Enhancers	Fetal Muscle Trunk	muscle
46	chr3:101105400-101106400	Enhancers	Placenta	Placenta
47	chr3:101105400-101106400	Enhancers	Psoas Muscle	Psoas
48	chr3:101105400-101107200	Enhancers	Primary T cells fromperipheralblood	blood
49	chr3:101105400-101107200	Enhancers	Gastric	stomach
50	chr3:101105600-101106200	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links