Variant report

Variant	rs73863359
Chromosome Location	chr3:101303156-101303157
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101291863..101294659-chr3:101301787..101304313,3	MCF-7	breast:
2	chr3:101296777..101299755-chr3:101301756..101303953,2	MCF-7	breast:
3	chr3:101303003..101304560-chr3:101304626..101306294,2	MCF-7	breast:
4	chr3:101303155..101306104-chr3:101309279..101311204,2	K562	blood:

Variant related genes	Relation type
ENSG00000081154	Chromatin interaction

rs_ID	r²[population]
rs55858411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56041581	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56079188	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57379026	1.00[AMR][1000 genomes]
rs60380997	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73862804	1.00[AMR][1000 genomes]
rs73863098	1.00[AMR][1000 genomes]
rs73863380	0.86[AFR][1000 genomes]
rs73865623	1.00[AMR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101294000-101305200	Weak transcription	Esophagus	oesophagus
2	chr3:101294000-101312200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:101294200-101309000	Weak transcription	Colonic Mucosa	Colon
4	chr3:101294200-101310000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:101294200-101319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:101294400-101309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:101294800-101305200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:101295000-101304000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:101295000-101304600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:101295000-101304600	Weak transcription	NHEK	skin
11	chr3:101295000-101305000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:101295000-101305000	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:101295000-101309400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:101295000-101310200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:101295200-101306800	Weak transcription	Psoas Muscle	Psoas
16	chr3:101295800-101305200	Weak transcription	Gastric	stomach
17	chr3:101295800-101315000	Weak transcription	Right Atrium	heart
18	chr3:101296000-101324600	Weak transcription	Aorta	Aorta
19	chr3:101296200-101305200	Weak transcription	Fetal Brain Male	brain
20	chr3:101296200-101310000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:101296400-101303800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:101296400-101305200	Weak transcription	Thymus	Thymus
23	chr3:101296400-101316400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:101296600-101304000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:101296600-101304600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:101296600-101311600	Weak transcription	Stomach Mucosa	stomach
27	chr3:101296600-101315000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:101296800-101304600	Weak transcription	Left Ventricle	heart
29	chr3:101296800-101305000	Weak transcription	HSMMtube	muscle
30	chr3:101296800-101318000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:101297400-101303800	Weak transcription	Adipose Nuclei	Adipose
32	chr3:101297400-101314400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:101297600-101315200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:101297800-101303600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:101297800-101304600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:101297800-101305200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:101297800-101312400	Weak transcription	Brain Angular Gyrus	brain
38	chr3:101298000-101304400	Weak transcription	Fetal Lung	lung
39	chr3:101298600-101316400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr3:101298800-101303600	Weak transcription	Primary T cells from cord blood	blood
41	chr3:101298800-101304800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr3:101298800-101304800	Weak transcription	Pancreas	Pancrea
43	chr3:101298800-101305000	Weak transcription	Spleen	Spleen
44	chr3:101298800-101312000	Weak transcription	Fetal Heart	heart
45	chr3:101298800-101312800	Weak transcription	Small Intestine	intestine
46	chr3:101299000-101303600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:101299000-101304600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:101299000-101304600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr3:101299000-101304800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr3:101299000-101304800	Weak transcription	Brain Substantia Nigra	brain

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