Variant report

Variant	rs73871846
Chromosome Location	chr3:141335855-141335856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141331251..141333372-chr3:141334736..141336860,2	K562	blood:
2	chr3:141331872..141333537-chr3:141335143..141336860,2	K562	blood:
3	chr3:141204106..141207979-chr3:141333280..141335871,3	K562	blood:
4	chr3:141325633..141327918-chr3:141334802..141336687,2	MCF-7	breast:
5	chr3:141323458..141325878-chr3:141335451..141337403,2	K562	blood:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs56233244	1.00[AMR][1000 genomes]
rs56340836	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58287573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58701841	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58990624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59251956	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59719153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60338048	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869611	1.00[EUR][1000 genomes]
rs73869616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869623	1.00[AMR][1000 genomes]
rs73869632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869641	1.00[AMR][1000 genomes]
rs73869643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869652	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869672	1.00[AMR][1000 genomes]
rs73869674	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871839	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871845	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9858760	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141265200-141336200	Weak transcription	Psoas Muscle	Psoas
2	chr3:141277200-141341400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:141313200-141344000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:141320400-141337200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:141321800-141342600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:141324200-141336000	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr3:141325000-141338000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:141328800-141336000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:141330000-141338800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:141330200-141336600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:141330200-141338200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:141330400-141336400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:141330400-141336400	Weak transcription	NHEK	skin
14	chr3:141330400-141337000	Weak transcription	Lung	lung
15	chr3:141330400-141337400	Weak transcription	HSMMtube	muscle
16	chr3:141330400-141337800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:141330400-141338000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:141330400-141342000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:141330400-141342000	Weak transcription	Pancreas	Pancrea
20	chr3:141330400-141343200	Weak transcription	Brain Angular Gyrus	brain
21	chr3:141330400-141344000	Weak transcription	HMEC	breast
22	chr3:141330400-141344600	Weak transcription	NHLF	lung
23	chr3:141330600-141336400	Weak transcription	Fetal Intestine Small	intestine
24	chr3:141330600-141336800	Weak transcription	Thymus	Thymus
25	chr3:141330600-141337600	Weak transcription	Brain Germinal Matrix	brain
26	chr3:141330600-141338000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr3:141330600-141338200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:141330600-141339000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:141330600-141339200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:141330600-141344200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:141330600-141344200	Weak transcription	Ovary	ovary
32	chr3:141330800-141336000	Weak transcription	Fetal Intestine Large	intestine
33	chr3:141330800-141338400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr3:141330800-141338400	Weak transcription	Left Ventricle	heart
35	chr3:141330800-141344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:141331600-141338800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr3:141331800-141338600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr3:141332000-141337600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr3:141332000-141344600	Weak transcription	NHDF-Ad	bronchial
40	chr3:141332200-141336800	Weak transcription	Liver	Liver
41	chr3:141332200-141337000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr3:141332200-141337600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr3:141332200-141338200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr3:141332200-141339200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:141332400-141336200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:141332400-141337000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:141332400-141337000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr3:141332400-141339200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr3:141332400-141340600	Weak transcription	A549	lung
50	chr3:141332400-141344200	Weak transcription	HSMM	muscle

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