Variant report

Variant	rs9858760
Chromosome Location	chr3:141349721-141349722
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs56233244	1.00[AMR][1000 genomes]
rs56340836	1.00[AMR][1000 genomes]
rs58287573	1.00[AMR][1000 genomes]
rs58701841	1.00[AMR][1000 genomes]
rs58990624	1.00[AMR][1000 genomes]
rs59251956	1.00[AMR][1000 genomes]
rs59719153	1.00[AMR][1000 genomes]
rs60338048	1.00[AMR][1000 genomes]
rs73869616	1.00[AMR][1000 genomes]
rs73869623	1.00[AMR][1000 genomes]
rs73869632	1.00[AMR][1000 genomes]
rs73869637	1.00[AMR][1000 genomes]
rs73869640	1.00[AMR][1000 genomes]
rs73869641	1.00[AMR][1000 genomes]
rs73869643	1.00[AMR][1000 genomes]
rs73869652	1.00[AMR][1000 genomes]
rs73869655	1.00[AMR][1000 genomes]
rs73869657	1.00[AMR][1000 genomes]
rs73869665	1.00[AMR][1000 genomes]
rs73869672	1.00[AMR][1000 genomes]
rs73869674	1.00[AMR][1000 genomes]
rs73871838	1.00[AMR][1000 genomes]
rs73871839	1.00[AMR][1000 genomes]
rs73871845	1.00[AMR][1000 genomes]
rs73871846	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141348600-141350200	Enhancers	Fetal Intestine Small	intestine
2	chr3:141349000-141350000	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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