Variant report

Variant	rs73869632
Chromosome Location	chr3:141184409-141184410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141079528..141080322-chr3:141183757..141184563,2	MCF-7	breast:
2	chr3:141179908..141182127-chr3:141182376..141185079,2	K562	blood:
3	chr3:141022193..141022928-chr3:141183865..141184712,2	MCF-7	breast:
4	chr3:141087119..141089705-chr3:141184052..141185654,2	K562	blood:
5	chr3:141183744..141185593-chr3:141204841..141207517,2	MCF-7	breast:
6	chr3:141184151..141186428-chr3:141194623..141197205,2	MCF-7	breast:
7	chr3:141173783..141176363-chr3:141184238..141186556,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56233244	1.00[AMR][1000 genomes]
rs56340836	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58287573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58701841	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58990624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59251956	1.00[AMR][1000 genomes]
rs59719153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60338048	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869545	1.00[EUR][1000 genomes]
rs73869578	1.00[EUR][1000 genomes]
rs73869611	1.00[EUR][1000 genomes]
rs73869616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869623	1.00[AMR][1000 genomes]
rs73869637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869641	1.00[AMR][1000 genomes]
rs73869643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869652	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869657	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869665	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869672	1.00[AMR][1000 genomes]
rs73869674	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871839	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871845	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7619732	1.00[EUR][1000 genomes]
rs9858760	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv965217	chr3:141184266-141190303	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141177000-141189600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:141178000-141188200	Weak transcription	NHDF-Ad	bronchial
3	chr3:141183600-141184600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:141183600-141184600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:141183800-141184600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:141184000-141184600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:141184000-141184600	Enhancers	Osteobl	bone
8	chr3:141184200-141184600	Enhancers	NHLF	lung
9	chr3:141184400-141188200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:141184400-141188800	Weak transcription	NH-A	brain
11	chr3:141184400-141189600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links