Variant report

Variant	rs73869545
Chromosome Location	chr3:140975900-140975901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140965187..140967978-chr3:140974233..140977075,2	MCF-7	breast:
2	chr3:140975814..140978503-chr3:140979443..140982221,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155893	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11914783	1.00[EUR][1000 genomes]
rs11914819	1.00[EUR][1000 genomes]
rs11918339	1.00[EUR][1000 genomes]
rs11922466	1.00[EUR][1000 genomes]
rs59373674	1.00[EUR][1000 genomes]
rs59995199	1.00[EUR][1000 genomes]
rs60226518	1.00[EUR][1000 genomes]
rs60338048	1.00[EUR][1000 genomes]
rs60931350	1.00[EUR][1000 genomes]
rs6809141	1.00[EUR][1000 genomes]
rs73869578	1.00[EUR][1000 genomes]
rs73869611	1.00[EUR][1000 genomes]
rs73869616	1.00[EUR][1000 genomes]
rs73869632	1.00[EUR][1000 genomes]
rs7619732	1.00[EUR][1000 genomes]
rs7623527	1.00[EUR][1000 genomes]
rs7632283	1.00[EUR][1000 genomes]
rs7632369	1.00[EUR][1000 genomes]
rs7635077	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv877551	chr3:140970556-141029860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140951600-140979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:140955200-140980600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:140955400-140985800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:140957400-141001000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:140959200-140998400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:140960000-140980000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:140961000-140978800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:140961200-140985800	Weak transcription	Adipose Nuclei	Adipose
9	chr3:140961200-141012600	Weak transcription	Aorta	Aorta
10	chr3:140961400-140983200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:140962000-140985800	Weak transcription	Brain Anterior Caudate	brain
12	chr3:140962400-140977000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:140962400-140979200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:140962600-140978800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:140962600-140979600	Weak transcription	Fetal Intestine Large	intestine
16	chr3:140962600-140980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:140963400-140982800	Weak transcription	Brain Germinal Matrix	brain
18	chr3:140963600-140978800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:140964800-140978000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:140966000-140990200	Weak transcription	Psoas Muscle	Psoas
21	chr3:140966200-140979600	Weak transcription	Pancreas	Pancrea
22	chr3:140968000-140976600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:140968200-140979000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:140968200-140990000	Weak transcription	Gastric	stomach
25	chr3:140968400-140982800	Weak transcription	Fetal Lung	lung
26	chr3:140971000-140979000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr3:140971600-140976600	Enhancers	Fetal Heart	heart
28	chr3:140971600-140976800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:140971800-140977000	Enhancers	Thymus	Thymus
30	chr3:140972000-140979000	Weak transcription	Fetal Intestine Small	intestine
31	chr3:140972200-140979000	Weak transcription	Fetal Stomach	stomach
32	chr3:140973200-140976200	Enhancers	Fetal Muscle Leg	muscle
33	chr3:140973200-140979000	Enhancers	Fetal Thymus	thymus
34	chr3:140973600-140977000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr3:140974000-140976400	Enhancers	Fetal Brain Male	brain
36	chr3:140974600-140976000	Enhancers	Fetal Brain Female	brain
37	chr3:140974600-140976400	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr3:140974800-140985800	Weak transcription	Brain Hippocampus Middle	brain
39	chr3:140974800-140987400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr3:140974800-140991400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr3:140975000-140976000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr3:140975000-140979200	Weak transcription	Brain Angular Gyrus	brain
43	chr3:140975000-140979400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr3:140975000-140979400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr3:140975000-140979800	Weak transcription	Brain Substantia Nigra	brain
46	chr3:140975000-140984800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr3:140975000-140985800	Weak transcription	Right Atrium	heart
48	chr3:140975000-140993400	Weak transcription	Lung	lung
49	chr3:140975000-140993400	Weak transcription	Spleen	Spleen
50	chr3:140975200-140980600	Weak transcription	Muscle Satellite Cultured Cells	--

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