Variant report

Variant	rs11914819
Chromosome Location	chr3:140953586-140953587
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:30718582..30719390-chr3:140953478..140954181,2	MCF-7	breast:
2	chr3:140952467..140954037-chr3:140954214..140955849,2	MCF-7	breast:
3	chr3:140946887..140950533-chr3:140951414..140955380,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155893	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11914783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918339	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11922466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59373674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59995199	1.00[EUR][1000 genomes]
rs60226518	1.00[EUR][1000 genomes]
rs60450739	1.00[EUR][1000 genomes]
rs60931350	1.00[EUR][1000 genomes]
rs6809141	1.00[EUR][1000 genomes]
rs6810078	1.00[EUR][1000 genomes]
rs72978075	1.00[EUR][1000 genomes]
rs73869545	1.00[EUR][1000 genomes]
rs73869578	1.00[EUR][1000 genomes]
rs73869611	1.00[EUR][1000 genomes]
rs7619732	1.00[EUR][1000 genomes]
rs7623527	1.00[EUR][1000 genomes]
rs7632283	1.00[EUR][1000 genomes]
rs7632369	1.00[EUR][1000 genomes]
rs7635077	1.00[EUR][1000 genomes]
rs7642476	1.00[EUR][1000 genomes]
rs7645127	1.00[EUR][1000 genomes]
rs7651635	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140951200-140955400	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr3:140951600-140956200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:140951600-140956400	Weak transcription	Psoas Muscle	Psoas
4	chr3:140951600-140956600	Weak transcription	Gastric	stomach
5	chr3:140951600-140957000	Weak transcription	Aorta	Aorta
6	chr3:140951600-140959000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:140951600-140979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:140951800-140953600	Flanking Active TSS	Thymus	Thymus
9	chr3:140951800-140954600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:140951800-140954800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:140951800-140955200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:140951800-140955200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr3:140951800-140955200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:140951800-140955400	Weak transcription	Ovary	ovary
15	chr3:140951800-140955400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:140951800-140955800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:140951800-140956400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:140951800-140956400	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:140951800-140956600	Weak transcription	Fetal Lung	lung
20	chr3:140951800-140956800	Weak transcription	Right Atrium	heart
21	chr3:140951800-140956800	Weak transcription	Stomach Mucosa	stomach
22	chr3:140951800-140958800	Weak transcription	Osteobl	bone
23	chr3:140951800-140959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:140951800-140960200	Weak transcription	Esophagus	oesophagus
25	chr3:140951800-140960400	Weak transcription	Brain Substantia Nigra	brain
26	chr3:140951800-140962000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:140951800-140962200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:140952000-140953600	Enhancers	Primary T cells from cord blood	blood
29	chr3:140952000-140953600	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr3:140952000-140953600	Weak transcription	Fetal Intestine Large	intestine
31	chr3:140952000-140953600	Enhancers	Fetal Thymus	thymus
32	chr3:140952000-140953800	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr3:140952000-140954200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr3:140952000-140954200	Enhancers	Fetal Brain Male	brain
35	chr3:140952000-140954400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr3:140952000-140954400	Enhancers	HepG2	liver
37	chr3:140952000-140954600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr3:140952000-140954600	Weak transcription	Adipose Nuclei	Adipose
39	chr3:140952000-140954600	Weak transcription	Left Ventricle	heart
40	chr3:140952000-140954600	Weak transcription	Pancreas	Pancrea
41	chr3:140952000-140954800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr3:140952000-140954800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:140952000-140955200	Enhancers	Primary T cells fromperipheralblood	blood
44	chr3:140952000-140955200	Weak transcription	Small Intestine	intestine
45	chr3:140952000-140956200	Weak transcription	Brain Angular Gyrus	brain
46	chr3:140952000-140956200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr3:140952000-140956600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr3:140952000-140956600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr3:140952000-140956600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr3:140952000-140956800	Weak transcription	HSMM	muscle

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