Variant report

Variant	rs7645127
Chromosome Location	chr3:140777575-140777576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140763223..140765937-chr3:140775586..140778392,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11914783	1.00[EUR][1000 genomes]
rs11914819	1.00[EUR][1000 genomes]
rs11918339	1.00[EUR][1000 genomes]
rs11922466	1.00[EUR][1000 genomes]
rs59373674	1.00[EUR][1000 genomes]
rs59512502	1.00[AMR][1000 genomes]
rs59995199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60226518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60450739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60931350	1.00[EUR][1000 genomes]
rs6809141	1.00[EUR][1000 genomes]
rs6810078	1.00[EUR][1000 genomes]
rs72978075	1.00[EUR][1000 genomes]
rs7623527	1.00[EUR][1000 genomes]
rs7632283	1.00[EUR][1000 genomes]
rs7632369	1.00[EUR][1000 genomes]
rs7635077	1.00[EUR][1000 genomes]
rs7642476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7651635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432488	chr3:140752302-140790302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv591889	chr3:140769896-140778138	Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3464316	chr3:140776527-140779000	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3464317	chr3:140776527-140779000	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv591890	chr3:140776991-140778138	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv17263	chr3:140777010-140778650	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140772000-140779000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:140772000-140782600	Weak transcription	Psoas Muscle	Psoas
3	chr3:140772200-140777600	Enhancers	Fetal Heart	heart
4	chr3:140772200-140779000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:140774000-140777600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:140774000-140777600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:140774000-140777600	Enhancers	Brain Germinal Matrix	brain
8	chr3:140774600-140777800	Enhancers	Right Ventricle	heart
9	chr3:140775200-140779000	Weak transcription	Fetal Lung	lung
10	chr3:140775800-140777600	Enhancers	Fetal Muscle Trunk	muscle
11	chr3:140775800-140784200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:140776000-140777800	Weak transcription	Fetal Stomach	stomach
13	chr3:140776000-140779600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:140776000-140783400	Weak transcription	Right Atrium	heart
15	chr3:140776000-140787600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:140776400-140779000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:140776600-140779200	Enhancers	Pancreas	Pancrea
18	chr3:140776600-140787200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:140776800-140777600	Genic enhancers	Fetal Muscle Leg	muscle
20	chr3:140777200-140778000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:140777200-140781200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:140777400-140777800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:140777400-140778000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:140777400-140778000	ZNF genes & repeats	Dnd41	blood
25	chr3:140777400-140778400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:140777400-140779000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:140777400-140782600	Weak transcription	Fetal Kidney	kidney
28	chr3:140777400-140795000	Weak transcription	Fetal Brain Female	brain

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