Variant report

Variant	rs59373674
Chromosome Location	chr3:140932236-140932237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11914783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11914819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918339	1.00[EUR][1000 genomes]
rs11922466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59995199	1.00[EUR][1000 genomes]
rs60226518	1.00[EUR][1000 genomes]
rs60450739	1.00[EUR][1000 genomes]
rs60931350	1.00[EUR][1000 genomes]
rs6809141	1.00[EUR][1000 genomes]
rs6810078	1.00[EUR][1000 genomes]
rs72978075	1.00[EUR][1000 genomes]
rs73869545	1.00[EUR][1000 genomes]
rs73869578	1.00[EUR][1000 genomes]
rs7619732	1.00[EUR][1000 genomes]
rs7623527	1.00[EUR][1000 genomes]
rs7632283	1.00[EUR][1000 genomes]
rs7632369	1.00[EUR][1000 genomes]
rs7635077	1.00[EUR][1000 genomes]
rs7642476	1.00[EUR][1000 genomes]
rs7645127	1.00[EUR][1000 genomes]
rs7651635	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140931200-140932800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:140931600-140935200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:140931800-140936000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:140931800-140941200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:140932200-140933200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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