Variant report

Variant	rs73873216
Chromosome Location	chr3:144041648-144041649
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143940644..143942210-chr3:144039456..144041845,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs55760437	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56281959	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56411510	1.00[AMR][1000 genomes]
rs58807263	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60109748	1.00[AMR][1000 genomes]
rs60828791	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61478319	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61647903	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6763404	1.00[AMR][1000 genomes]
rs6767584	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871167	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871168	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871170	1.00[AMR][1000 genomes]
rs73871174	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871177	1.00[AMR][1000 genomes]
rs73871179	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871180	0.90[AFR][1000 genomes]
rs73871181	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871183	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871184	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871185	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871186	1.00[AMR][1000 genomes]
rs73871187	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871191	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871196	1.00[AMR][1000 genomes]
rs73873203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873207	1.00[AMR][1000 genomes]
rs73873209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1002032	chr3:143848755-144065468	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv591926	chr3:143873901-144058395	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv591927	chr3:143998527-144054686	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144040600-144041800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:144040800-144042600	Weak transcription	Gastric	stomach

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