Variant report
Variant | rs73873222 |
---|---|
Chromosome Location | chr3:144053375-144053376 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:144047302..144050208-chr3:144050986..144053451,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs55760437 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56281959 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56411510 | 1.00[AMR][1000 genomes] |
rs58807263 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60109748 | 1.00[AMR][1000 genomes] |
rs60828791 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61478319 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61647903 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6763404 | 1.00[AMR][1000 genomes] |
rs6767584 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73871167 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73871168 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73871170 | 1.00[AMR][1000 genomes] |
rs73871174 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73871177 | 1.00[AMR][1000 genomes] |
rs73871179 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73871180 | 0.90[AFR][1000 genomes] |
rs73871181 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73871183 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73871184 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73871185 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73871186 | 1.00[AMR][1000 genomes] |
rs73871187 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73871191 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73871196 | 1.00[AMR][1000 genomes] |
rs73873203 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73873205 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73873207 | 1.00[AMR][1000 genomes] |
rs73873209 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73873216 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73873233 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1010117 | chr3:143750590-144093775 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv536748 | chr3:143750590-144093775 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv532633 | chr3:143802417-144440646 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv1002032 | chr3:143848755-144065468 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
5 | nsv877570 | chr3:143853149-144123401 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv591926 | chr3:143873901-144058395 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
7 | nsv1011685 | chr3:143959237-144218424 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
8 | nsv536751 | chr3:143959237-144218424 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
9 | nsv591927 | chr3:143998527-144054686 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
10 | nsv980040 | chr3:144049507-144054115 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
11 | nsv591928 | chr3:144050897-144822081 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:144052600-144053600 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |