Variant report

Variant	rs55760437
Chromosome Location	chr3:143988750-143988751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs56281959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56411510	1.00[AMR][1000 genomes]
rs58807263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60109748	1.00[AMR][1000 genomes]
rs60828791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61478319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61647903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6763404	1.00[AMR][1000 genomes]
rs6767584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871170	1.00[AMR][1000 genomes]
rs73871174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871177	1.00[AMR][1000 genomes]
rs73871179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871180	1.00[AFR][1000 genomes]
rs73871181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871186	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871196	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873203	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873205	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873207	1.00[AMR][1000 genomes]
rs73873209	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873216	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873222	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873233	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv591925	chr3:143821997-144019763	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1007963	chr3:143836773-144000203	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv536750	chr3:143836773-144000203	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1002032	chr3:143848755-144065468	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv591926	chr3:143873901-144058395	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv980023	chr3:143981697-144036271	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143988200-143990000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:143988400-143989400	Enhancers	GM12878-XiMat	blood
3	chr3:143988600-143989400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:143988600-143989800	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:143988600-143989800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links