Variant report

Variant	rs7387704
Chromosome Location	chr8:54610657-54610658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1031980	0.86[AMR][1000 genomes]
rs10435587	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11994467	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11996300	0.86[AMR][1000 genomes]
rs12056486	0.81[ASN][1000 genomes]
rs12056719	0.80[ASN][1000 genomes]
rs13276766	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16919507	0.81[AMR][1000 genomes]
rs16919508	0.86[AMR][1000 genomes]
rs16919522	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16919534	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16919537	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16919563	0.86[AMR][1000 genomes]
rs1872063	0.86[AMR][1000 genomes]
rs1905061	0.81[AMR][1000 genomes]
rs2128150	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2376011	0.80[ASN][1000 genomes]
rs3757954	0.91[AMR][1000 genomes]
rs41321146	0.80[ASN][1000 genomes]
rs4236945	0.86[AMR][1000 genomes]
rs4737518	0.86[AMR][1000 genomes]
rs4737554	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4737558	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4737764	0.86[AMR][1000 genomes]
rs4737821	0.84[AMR][1000 genomes]
rs4738470	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4738646	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4738701	0.82[AMR][1000 genomes]
rs55682919	0.82[AMR][1000 genomes]
rs56818292	0.87[ASN][1000 genomes]
rs56973376	0.82[ASN][1000 genomes]
rs57550901	0.82[AMR][1000 genomes]
rs58473841	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58558817	0.80[ASN][1000 genomes]
rs58970885	0.86[AMR][1000 genomes]
rs61070518	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6984257	0.82[AMR][1000 genomes]
rs6986372	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6987427	0.80[ASN][1000 genomes]
rs6988009	0.89[AMR][1000 genomes]
rs6988082	0.82[AMR][1000 genomes]
rs6988812	0.82[AMR][1000 genomes]
rs6997003	0.82[AMR][1000 genomes]
rs6999454	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7009705	0.86[AMR][1000 genomes]
rs73587624	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73587627	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73682555	0.83[ASN][1000 genomes]
rs7843701	0.86[AMR][1000 genomes]
rs900163	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs958268	0.86[AMR][1000 genomes]
rs9643480	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9643819	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9643820	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758159	chr8:54474589-54737473	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759616	chr8:54474589-54737473	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv890920	chr8:54559770-54626539	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54605800-54626800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links