Variant report

Variant	rs73881179
Chromosome Location	chr22:29314401-29314402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16986964	1.00[AMR][1000 genomes]
rs16986970	1.00[AMR][1000 genomes]
rs16987068	1.00[AMR][1000 genomes]
rs56752813	1.00[AMR][1000 genomes]
rs57111962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57724605	1.00[AMR][1000 genomes]
rs59264876	1.00[AMR][1000 genomes]
rs60213855	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6519768	1.00[AMR][1000 genomes]
rs73881171	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73881178	0.89[AFR][1000 genomes]
rs73881184	1.00[AMR][1000 genomes]
rs73881191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73881193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882412	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882417	1.00[AMR][1000 genomes]
rs73882419	1.00[AMR][1000 genomes]
rs73882420	1.00[AMR][1000 genomes]
rs73882421	1.00[AMR][1000 genomes]
rs73882423	1.00[AMR][1000 genomes]
rs73882432	1.00[AMR][1000 genomes]
rs73882446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29311600-29315600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr22:29311600-29316000	Enhancers	Fetal Lung	lung
3	chr22:29312000-29315800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr22:29312200-29314600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr22:29312200-29315200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr22:29312200-29315800	Enhancers	Fetal Muscle Leg	muscle
7	chr22:29312200-29316000	Enhancers	Placenta	Placenta
8	chr22:29312400-29315200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr22:29312400-29315200	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr22:29312400-29315200	Enhancers	Fetal Brain Female	brain
11	chr22:29312400-29315400	Enhancers	Brain Anterior Caudate	brain
12	chr22:29312400-29315400	Enhancers	Ovary	ovary
13	chr22:29312400-29315600	Enhancers	Fetal Stomach	stomach
14	chr22:29312600-29315000	Enhancers	Psoas Muscle	Psoas
15	chr22:29312600-29315200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr22:29312600-29315200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr22:29312600-29315200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr22:29312600-29315200	Enhancers	Fetal Brain Male	brain
19	chr22:29312600-29315200	Enhancers	Fetal Intestine Large	intestine
20	chr22:29312600-29315200	Enhancers	Left Ventricle	heart
21	chr22:29312600-29315400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr22:29312600-29315400	Enhancers	Brain Angular Gyrus	brain
23	chr22:29312600-29316000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr22:29312800-29315000	Enhancers	Right Ventricle	heart
25	chr22:29312800-29315200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr22:29312800-29315400	Enhancers	Brain Cingulate Gyrus	brain
27	chr22:29312800-29315400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr22:29313000-29314800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr22:29313000-29315000	Enhancers	H1 Cell Line	embryonic stem cell
30	chr22:29313000-29315000	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr22:29313000-29315000	Enhancers	Lung	lung
32	chr22:29313000-29315000	Enhancers	Pancreas	Pancrea
33	chr22:29313000-29315200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr22:29313000-29315200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr22:29313000-29315200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr22:29313000-29315200	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr22:29313000-29315200	Enhancers	Right Atrium	heart
38	chr22:29313000-29315200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr22:29313000-29315200	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr22:29313000-29315800	Enhancers	Fetal Muscle Trunk	muscle
41	chr22:29313200-29314600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr22:29313200-29314600	Enhancers	A549	lung
43	chr22:29313200-29314800	Enhancers	Esophagus	oesophagus
44	chr22:29313200-29315000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr22:29313200-29315000	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr22:29313200-29315200	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr22:29313200-29315200	Enhancers	Gastric	stomach
48	chr22:29313200-29315200	Enhancers	Placenta Amnion	Placenta Amnion
49	chr22:29313200-29315200	Enhancers	Stomach Mucosa	stomach
50	chr22:29313200-29315400	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links