Variant report

Variant	rs73882446
Chromosome Location	chr22:29441806-29441807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:29277889..29280481-chr22:29440283..29442464,3	MCF-7	breast:
2	chr22:29195630..29197790-chr22:29440698..29444304,5	MCF-7	breast:
3	chr22:29436800..29439536-chr22:29439547..29442052,2	K562	blood:
4	chr22:29440576..29442454-chr22:29442829..29445224,2	K562	blood:

Variant related genes	Relation type
ENSG00000183579	Chromatin interaction
ENSG00000100219	Chromatin interaction
ENSG00000226471	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16986964	1.00[AMR][1000 genomes]
rs16986970	1.00[AMR][1000 genomes]
rs16987068	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56752813	1.00[AMR][1000 genomes]
rs57111962	1.00[AMR][1000 genomes]
rs57724605	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59264876	1.00[AMR][1000 genomes]
rs60213855	1.00[AMR][1000 genomes]
rs6519768	1.00[AMR][1000 genomes]
rs73881171	1.00[AMR][1000 genomes]
rs73881179	1.00[AMR][1000 genomes]
rs73881184	1.00[AMR][1000 genomes]
rs73881191	1.00[AMR][1000 genomes]
rs73881193	1.00[AMR][1000 genomes]
rs73882412	1.00[AMR][1000 genomes]
rs73882417	1.00[AMR][1000 genomes]
rs73882419	1.00[AMR][1000 genomes]
rs73882420	1.00[AMR][1000 genomes]
rs73882421	1.00[AMR][1000 genomes]
rs73882423	1.00[AMR][1000 genomes]
rs73882432	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29427400-29448400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr22:29427800-29451400	Weak transcription	Psoas Muscle	Psoas
3	chr22:29428800-29443600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr22:29429000-29444000	Weak transcription	Right Ventricle	heart
5	chr22:29436800-29442600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr22:29436800-29443800	Weak transcription	Hela-S3	cervix
7	chr22:29436800-29445600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr22:29437200-29442200	Weak transcription	Small Intestine	intestine
9	chr22:29437200-29443000	Weak transcription	K562	blood
10	chr22:29437200-29443200	Weak transcription	Brain Angular Gyrus	brain
11	chr22:29437200-29443800	Weak transcription	Fetal Heart	heart
12	chr22:29437200-29450800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr22:29437800-29448800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr22:29437800-29450200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr22:29438000-29442000	Weak transcription	Brain Hippocampus Middle	brain
16	chr22:29438000-29442800	Weak transcription	Fetal Brain Male	brain
17	chr22:29438000-29447200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr22:29438200-29447400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr22:29438400-29449800	Strong transcription	Fetal Stomach	stomach
20	chr22:29438400-29451800	Strong transcription	Fetal Intestine Small	intestine
21	chr22:29438600-29445400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr22:29438600-29445600	Strong transcription	Fetal Muscle Trunk	muscle
23	chr22:29439000-29447400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr22:29439000-29447400	Strong transcription	Fetal Intestine Large	intestine
25	chr22:29439000-29447400	Strong transcription	Stomach Smooth Muscle	stomach
26	chr22:29439000-29449800	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr22:29439000-29450200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr22:29439200-29445400	Strong transcription	Fetal Muscle Leg	muscle
29	chr22:29439200-29447000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr22:29439200-29447400	Strong transcription	H9 Cell Line	embryonic stem cell
31	chr22:29439200-29447400	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr22:29439200-29447400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr22:29439200-29447400	Strong transcription	Pancreas	Pancrea
34	chr22:29439200-29447600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr22:29439200-29447600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr22:29439400-29447000	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr22:29439400-29447400	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr22:29439400-29448400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr22:29439400-29448400	Strong transcription	Brain Anterior Caudate	brain
40	chr22:29439600-29444600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
41	chr22:29439600-29444800	Strong transcription	Left Ventricle	heart
42	chr22:29439600-29445200	Strong transcription	Fetal Kidney	kidney
43	chr22:29440000-29445400	Strong transcription	Fetal Lung	lung
44	chr22:29440000-29446400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr22:29440000-29447400	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr22:29440000-29447400	Strong transcription	Spleen	Spleen
47	chr22:29440000-29447600	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr22:29440000-29451400	Weak transcription	Fetal Thymus	thymus
49	chr22:29440200-29448800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr22:29440400-29442600	Strong transcription	Rectal Smooth Muscle	rectum

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