Variant report

Variant	rs73881191
Chromosome Location	chr22:29323567-29323568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16986964	1.00[AMR][1000 genomes]
rs16986970	1.00[AMR][1000 genomes]
rs16987068	1.00[AMR][1000 genomes]
rs56752813	1.00[AMR][1000 genomes]
rs57111962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57724605	1.00[AMR][1000 genomes]
rs59264876	1.00[AMR][1000 genomes]
rs60213855	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6519768	1.00[AMR][1000 genomes]
rs73881171	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73881178	0.89[AFR][1000 genomes]
rs73881179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73881184	1.00[AMR][1000 genomes]
rs73881193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882412	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882417	1.00[AMR][1000 genomes]
rs73882419	1.00[AMR][1000 genomes]
rs73882420	1.00[AMR][1000 genomes]
rs73882421	1.00[AMR][1000 genomes]
rs73882423	1.00[AMR][1000 genomes]
rs73882432	1.00[AMR][1000 genomes]
rs73882446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29314400-29342800	Weak transcription	Brain Substantia Nigra	brain
2	chr22:29314800-29328400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:29315200-29326400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:29315800-29325000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr22:29317600-29325400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr22:29317800-29329400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr22:29318200-29326600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr22:29319400-29326200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr22:29320200-29326400	Weak transcription	Aorta	Aorta
10	chr22:29320200-29326400	Weak transcription	Left Ventricle	heart
11	chr22:29320400-29323600	Weak transcription	Brain Germinal Matrix	brain
12	chr22:29320400-29325200	Weak transcription	Gastric	stomach
13	chr22:29320400-29325800	Weak transcription	A549	lung
14	chr22:29320400-29326400	Weak transcription	Fetal Heart	heart
15	chr22:29320400-29326600	Weak transcription	Brain Angular Gyrus	brain
16	chr22:29320400-29328800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr22:29320600-29323800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr22:29320600-29325200	Weak transcription	Lung	lung
19	chr22:29320600-29325600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr22:29320600-29326200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr22:29320600-29326400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr22:29320600-29326400	Weak transcription	Psoas Muscle	Psoas
23	chr22:29320600-29326400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr22:29320600-29326400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr22:29320600-29326600	Weak transcription	Fetal Brain Male	brain
26	chr22:29320600-29327600	Weak transcription	Esophagus	oesophagus
27	chr22:29320600-29330800	Weak transcription	Fetal Muscle Leg	muscle
28	chr22:29320600-29332200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr22:29321000-29326400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr22:29321000-29339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr22:29321800-29325200	Weak transcription	Brain Hippocampus Middle	brain
32	chr22:29321800-29326400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr22:29322000-29326400	Weak transcription	Fetal Intestine Large	intestine
34	chr22:29322000-29336600	Weak transcription	NHEK	skin
35	chr22:29322200-29323600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr22:29322200-29323600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr22:29322200-29325200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr22:29322200-29325200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr22:29322200-29325600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr22:29322200-29325600	Weak transcription	Fetal Intestine Small	intestine
41	chr22:29322200-29326400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr22:29322200-29326400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr22:29322200-29326400	Weak transcription	Brain Anterior Caudate	brain
44	chr22:29322200-29326400	Weak transcription	Ovary	ovary
45	chr22:29322200-29326400	Weak transcription	Right Atrium	heart
46	chr22:29322200-29326600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr22:29322200-29333400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr22:29322400-29323600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr22:29322400-29323600	Weak transcription	Liver	Liver
50	chr22:29322400-29324200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links