Variant report

Variant	rs73897607
Chromosome Location	chr20:15456123-15456124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1233718	1.00[AMR][1000 genomes]
rs1233719	1.00[AMR][1000 genomes]
rs440319	1.00[EUR][1000 genomes]
rs55920771	1.00[AMR][1000 genomes]
rs59755830	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60053857	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043247	1.00[AMR][1000 genomes]
rs73897620	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73897622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73897623	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8126259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15453200-15461200	Weak transcription	Lung	lung
2	chr20:15454600-15457200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:15455800-15456400	Enhancers	Colon Smooth Muscle	Colon
4	chr20:15455800-15456600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr20:15455800-15457200	Enhancers	GM12878-XiMat	blood
6	chr20:15455800-15457400	Enhancers	Fetal Heart	heart
7	chr20:15456000-15456400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr20:15456000-15456400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr20:15456000-15456400	Enhancers	Pancreas	Pancrea
10	chr20:15456000-15456600	Enhancers	Brain Cingulate Gyrus	brain
11	chr20:15456000-15456600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr20:15456000-15456600	Enhancers	Fetal Muscle Leg	muscle
13	chr20:15456000-15456800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr20:15456000-15456800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr20:15456000-15457200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr20:15456000-15457400	Enhancers	Duodenum Smooth Muscle	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links