Variant report

Variant	rs73897622
Chromosome Location	chr20:15467601-15467602
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1233718	1.00[AMR][1000 genomes]
rs1233719	1.00[AMR][1000 genomes]
rs440319	1.00[EUR][1000 genomes]
rs55920771	1.00[AMR][1000 genomes]
rs59755830	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60053857	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043247	1.00[AMR][1000 genomes]
rs73897607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73897620	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73897623	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8126259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15466000-15469200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr20:15466200-15469000	Enhancers	Fetal Heart	heart
3	chr20:15466800-15469000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:15466800-15472000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr20:15467200-15468000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr20:15467200-15468400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr20:15467400-15468000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr20:15467400-15468800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr20:15467600-15468000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr20:15467600-15468000	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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