Variant report

Variant	rs73907605
Chromosome Location	chr20:25649448-25649449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25603691..25605577-chr20:25648966..25650747,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213742	Chromatin interaction
ENSG00000170191	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56751491	1.00[AMR][1000 genomes]
rs57450264	1.00[AMR][1000 genomes]
rs59222176	1.00[AMR][1000 genomes]
rs60483717	1.00[AMR][1000 genomes]
rs73904490	1.00[AMR][1000 genomes]
rs73904496	1.00[AMR][1000 genomes]
rs73904499	1.00[AMR][1000 genomes]
rs73904659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73907614	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25605600-25654600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr20:25609200-25653400	Weak transcription	Brain Substantia Nigra	brain
3	chr20:25611400-25653200	Weak transcription	Fetal Intestine Small	intestine
4	chr20:25616000-25653600	Weak transcription	Adipose Nuclei	Adipose
5	chr20:25617000-25650400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr20:25617600-25653400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr20:25618400-25653600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr20:25618400-25653600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr20:25623200-25653600	Weak transcription	Pancreas	Pancrea
10	chr20:25625000-25655200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr20:25626400-25653600	Weak transcription	Fetal Muscle Leg	muscle
12	chr20:25626800-25654000	Weak transcription	Gastric	stomach
13	chr20:25628200-25653600	Weak transcription	Esophagus	oesophagus
14	chr20:25628800-25653400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr20:25628800-25653400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr20:25628800-25653400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr20:25629000-25652200	Weak transcription	Liver	Liver
18	chr20:25629000-25653400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr20:25629000-25653600	Weak transcription	Brain Hippocampus Middle	brain
20	chr20:25629000-25653600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr20:25629000-25653800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr20:25629200-25650800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr20:25629400-25650400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr20:25629400-25650400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr20:25632600-25653600	Weak transcription	Brain Anterior Caudate	brain
26	chr20:25641200-25653800	Weak transcription	Right Ventricle	heart
27	chr20:25641600-25653800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr20:25642600-25653400	Weak transcription	Dnd41	blood
29	chr20:25642800-25652200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr20:25643400-25653400	Weak transcription	A549	lung
31	chr20:25648000-25653600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr20:25648000-25653800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr20:25648600-25653400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr20:25649000-25649800	Enhancers	Fetal Thymus	thymus
35	chr20:25649000-25649800	Enhancers	Thymus	Thymus
36	chr20:25649200-25649600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr20:25649200-25653200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr20:25649200-25655200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr20:25649400-25649600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr20:25649400-25650400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr20:25649400-25653600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr20:25649400-25653800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr20:25649400-25653800	Weak transcription	Spleen	Spleen
44	chr20:25649400-25654400	Weak transcription	Fetal Kidney	kidney

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