Variant report

Variant	rs73918434
Chromosome Location	chr2:12185926-12185927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:12176844..12179370-chr2:12184810..12186635,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56260961	0.90[EUR][1000 genomes]
rs59609793	0.90[EUR][1000 genomes]
rs60195725	0.90[EUR][1000 genomes]
rs60873627	0.90[EUR][1000 genomes]
rs73918410	0.90[EUR][1000 genomes]
rs73918411	0.90[EUR][1000 genomes]
rs73918413	0.90[EUR][1000 genomes]
rs73918415	0.90[EUR][1000 genomes]
rs73918416	0.90[EUR][1000 genomes]
rs73918422	0.90[EUR][1000 genomes]
rs73918423	0.90[EUR][1000 genomes]
rs73918424	0.90[EUR][1000 genomes]
rs73918426	0.90[EUR][1000 genomes]
rs73918427	0.90[EUR][1000 genomes]
rs73918432	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005069	chr2:12161023-12242734	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1000696	chr2:12162843-12241022	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12181600-12193200	Enhancers	Primary B cells from peripheral blood	blood
2	chr2:12182600-12189200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:12182600-12189400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr2:12183200-12186800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:12183600-12187000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr2:12183600-12189400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr2:12184000-12186600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:12184000-12187200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:12184200-12186000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:12184200-12190400	Weak transcription	K562	blood
11	chr2:12184600-12187000	Flanking Active TSS	GM12878-XiMat	blood
12	chr2:12185000-12187400	Enhancers	Fetal Brain Male	brain
13	chr2:12185200-12186400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:12185200-12186600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr2:12185400-12187000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr2:12185400-12187000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr2:12185400-12189200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr2:12185400-12190400	Weak transcription	Dnd41	blood
19	chr2:12185600-12186000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:12185600-12186400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr2:12185600-12186400	Weak transcription	Fetal Brain Female	brain
22	chr2:12185600-12186600	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr2:12185600-12186800	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr2:12185600-12187600	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr2:12185600-12187600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:12185600-12189400	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr2:12185600-12190400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr2:12185600-12191200	Enhancers	Primary B cells from cord blood	blood
29	chr2:12185800-12187000	Enhancers	Fetal Muscle Leg	muscle
30	chr2:12185800-12187200	Enhancers	Primary T cells from cord blood	blood
31	chr2:12185800-12188800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:12185800-12189200	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr2:12185800-12190200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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