Variant report

Variant	rs73918432
Chromosome Location	chr2:12182171-12182172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:12180693..12182626-chr2:12190865..12193405,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12463701	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12464227	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12469736	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12471363	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12475585	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12476249	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28420399	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56260961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59609793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60195725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60873627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73915889	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73915899	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73915902	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73918407	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73918410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73918426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918434	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005069	chr2:12161023-12242734	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1000696	chr2:12162843-12241022	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12177800-12182200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr2:12177800-12182400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:12177800-12182600	Weak transcription	Primary T cells from cord blood	blood
4	chr2:12177800-12183400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:12178000-12182400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr2:12178000-12183600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr2:12178000-12183800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr2:12181400-12185000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:12181600-12193200	Enhancers	Primary B cells from peripheral blood	blood
10	chr2:12182000-12182600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr2:12182000-12184600	Enhancers	Primary B cells from cord blood	blood

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