Variant report

Variant	rs73918422
Chromosome Location	chr2:12170507-12170508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12463701	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12464227	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12469736	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12471363	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12475585	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12476249	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28420399	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56260961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59609793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60195725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60873627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73915889	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73915899	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73915902	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73918407	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73918410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73918426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73918434	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005069	chr2:12161023-12242734	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1000696	chr2:12162843-12241022	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12167600-12171800	Weak transcription	K562	blood
2	chr2:12167600-12172400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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