Variant report

Variant	rs73919620
Chromosome Location	chr2:20878410-20878411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GDF7-1	chr2:20877569-20879005	ENSG00000260396.1
2	lnc-C2orf43-3	chr2:20878014-20878692	ENSG00000270100.1

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs57140039	1.00[AMR][1000 genomes]
rs6731240	1.00[AMR][1000 genomes]
rs73224603	1.00[AMR][1000 genomes]
rs73224605	1.00[AMR][1000 genomes]
rs73224606	1.00[AMR][1000 genomes]
rs73224618	1.00[AMR][1000 genomes]
rs73224621	1.00[AMR][1000 genomes]
rs73224631	1.00[AMR][1000 genomes]
rs73224632	1.00[AMR][1000 genomes]
rs73226507	1.00[AMR][1000 genomes]
rs73226515	1.00[AMR][1000 genomes]
rs73226522	1.00[AMR][1000 genomes]
rs73226523	1.00[AMR][1000 genomes]
rs73226524	1.00[AMR][1000 genomes]
rs73226525	1.00[AMR][1000 genomes]
rs73243138	1.00[AMR][1000 genomes]
rs73919626	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008473	chr2:20811359-20879186	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv535599	chr2:20811359-20879186	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535600	chr2:20847698-20879186	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1003220	chr2:20847698-20895698	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv535601	chr2:20847698-20895698	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20871200-20885800	Weak transcription	Right Ventricle	heart
2	chr2:20871400-20879000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:20874200-20884400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:20874400-20879200	Weak transcription	Left Ventricle	heart
5	chr2:20874600-20886600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:20874800-20879600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr2:20874800-20880000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:20874800-20880400	Weak transcription	Thymus	Thymus
9	chr2:20875000-20891000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:20875200-20880800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr2:20875200-20881200	Weak transcription	Adipose Nuclei	Adipose
12	chr2:20875200-20883000	Weak transcription	K562	blood
13	chr2:20875200-20885200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:20875200-20898800	Weak transcription	NH-A	brain
15	chr2:20875400-20879200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:20875400-20885000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:20875400-20885000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr2:20875400-20891000	Weak transcription	Colon Smooth Muscle	Colon
19	chr2:20875400-20902800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr2:20875600-20880400	Weak transcription	Spleen	Spleen
21	chr2:20875600-20880800	Weak transcription	HSMMtube	muscle
22	chr2:20875600-20883000	Weak transcription	Brain Anterior Caudate	brain
23	chr2:20875600-20884600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr2:20875600-20885800	Weak transcription	Lung	lung
25	chr2:20875600-20898400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr2:20875600-20898600	Weak transcription	Osteobl	bone
27	chr2:20875800-20879600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:20875800-20880400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr2:20875800-20880600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr2:20875800-20880600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr2:20875800-20880600	Weak transcription	NHLF	lung
32	chr2:20875800-20881000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr2:20875800-20881200	Weak transcription	Fetal Lung	lung
34	chr2:20875800-20884200	Weak transcription	Ovary	ovary
35	chr2:20875800-20884400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr2:20875800-20887000	Weak transcription	NHDF-Ad	bronchial
37	chr2:20875800-20909200	Weak transcription	NHEK	skin
38	chr2:20876000-20880400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr2:20876000-20881000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr2:20876000-20881400	Weak transcription	Fetal Thymus	thymus
41	chr2:20876000-20881600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:20876000-20882400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr2:20876000-20884400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr2:20876000-20885000	Weak transcription	Fetal Kidney	kidney
45	chr2:20876000-20887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr2:20876000-20889600	Weak transcription	Esophagus	oesophagus
47	chr2:20876000-20902200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr2:20876200-20880200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr2:20876200-20880600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr2:20876200-20884600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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