Variant report

Variant	rs73930968
Chromosome Location	chr19:37820124-37820125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37819186..37820687-chr19:37835807..37837449,2	MCF-7	breast:
2	chr19:37808613..37811422-chr19:37818380..37821776,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF527-1	chr19:37819127-37820601	ENSG00000248454

Variant related genes	Relation type
ENSG00000181666	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56065431	1.00[AFR][1000 genomes]
rs58208767	1.00[AFR][1000 genomes]
rs73930969	1.00[AFR][1000 genomes]
rs73930971	1.00[AFR][1000 genomes]
rs73930980	1.00[AFR][1000 genomes]
rs73930981	1.00[AFR][1000 genomes]
rs73932908	1.00[AFR][1000 genomes]
rs73932910	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv978811	chr19:37749967-37820517	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37809200-37824800	Weak transcription	Stomach Mucosa	stomach
2	chr19:37809400-37825000	Weak transcription	Fetal Thymus	thymus
3	chr19:37809400-37825000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr19:37809600-37824400	Weak transcription	NHDF-Ad	bronchial
5	chr19:37809600-37825000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:37810000-37825000	Weak transcription	Hela-S3	cervix
7	chr19:37810200-37821800	ZNF genes & repeats	A549	lung
8	chr19:37810400-37821000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr19:37810400-37821600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:37810600-37824400	Weak transcription	Small Intestine	intestine
11	chr19:37810600-37824800	Weak transcription	Fetal Heart	heart
12	chr19:37810800-37824200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr19:37811000-37821400	Strong transcription	Fetal Stomach	stomach
14	chr19:37811600-37820200	Weak transcription	NH-A	brain
15	chr19:37811600-37821000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr19:37811600-37821200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr19:37811600-37825000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr19:37811800-37821600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr19:37812200-37821000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr19:37812600-37820600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr19:37812600-37820800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr19:37812600-37821000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr19:37813000-37821400	Strong transcription	Stomach Smooth Muscle	stomach
24	chr19:37813200-37821200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:37813200-37821400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr19:37813200-37821400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr19:37813200-37821400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr19:37813200-37821400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr19:37813200-37821800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr19:37813400-37820400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr19:37813400-37821600	Strong transcription	Fetal Muscle Trunk	muscle
32	chr19:37813400-37821600	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr19:37813400-37821600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr19:37813600-37820800	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr19:37813600-37821400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr19:37813800-37820200	Strong transcription	Dnd41	blood
37	chr19:37813800-37820600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
38	chr19:37813800-37820800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr19:37813800-37821400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr19:37813800-37821600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr19:37813800-37821800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr19:37813800-37821800	Strong transcription	Fetal Intestine Large	intestine
43	chr19:37814000-37821600	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr19:37814400-37820200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr19:37814400-37821000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr19:37814400-37821200	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr19:37814400-37821200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr19:37814400-37821600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr19:37814600-37820600	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr19:37814600-37821200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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