Variant report

Variant	rs73932910
Chromosome Location	chr19:38041851-38041852
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:38041841-38042543	GM12891	blood:	n/a	n/a
2	GATA2	chr19:38041792-38042701	SH-SY5Y	brain:	n/a	n/a
3	POLR2A	chr19:38041715-38042872	HL-60	blood:	n/a	n/a
4	MXI1	chr19:38041643-38043238	SK-N-SH	brain:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37860446..37862285-chr19:38041060..38043682,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF793-1	chr19:38041764-38041893	NONHSAT066134
2	lnc-ZNF793-1	chr19:38041764-38041893	ENSG00000267470.1

No data

Variant related genes	Relation type
ZNF571-AS1	TF binding region
ENSG00000180458	TF binding region
ZNF540	TF binding region
ENSG00000189164	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56065431	1.00[AFR][1000 genomes]
rs58208767	1.00[AFR][1000 genomes]
rs73930968	1.00[AFR][1000 genomes]
rs73930969	1.00[AFR][1000 genomes]
rs73930971	1.00[AFR][1000 genomes]
rs73930980	1.00[AFR][1000 genomes]
rs73930981	1.00[AFR][1000 genomes]
rs73932908	1.00[AFR][1000 genomes]
rs73932913	1.00[AFR][1000 genomes]
rs73932916	1.00[AFR][1000 genomes]
rs73932922	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv2478	chr19:38025340-38043818	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38029800-38042000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:38032400-38080800	ZNF genes & repeats	Liver	Liver
3	chr19:38032600-38075200	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:38035000-38042800	ZNF genes & repeats	Brain Hippocampus Middle	brain
5	chr19:38037800-38042800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
6	chr19:38037800-38043000	ZNF genes & repeats	Fetal Brain Female	brain
7	chr19:38037800-38043200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr19:38037800-38043800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
9	chr19:38037800-38045400	ZNF genes & repeats	Brain Anterior Caudate	brain
10	chr19:38038000-38042400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
11	chr19:38038000-38042600	ZNF genes & repeats	Brain Angular Gyrus	brain
12	chr19:38038000-38042800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
13	chr19:38038000-38042800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
14	chr19:38038000-38043000	ZNF genes & repeats	Brain Germinal Matrix	brain
15	chr19:38038000-38078400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr19:38038600-38042800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr19:38038600-38042800	ZNF genes & repeats	Brain Substantia Nigra	brain
18	chr19:38038600-38079600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
19	chr19:38038800-38045600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr19:38039000-38042800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
21	chr19:38039000-38043000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr19:38039200-38042800	ZNF genes & repeats	Esophagus	oesophagus
23	chr19:38039200-38043000	ZNF genes & repeats	Thymus	Thymus
24	chr19:38039400-38042200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr19:38039400-38042800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr19:38039400-38042800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr19:38039400-38042800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr19:38039600-38042800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
29	chr19:38039800-38042600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr19:38039800-38042600	ZNF genes & repeats	Fetal Brain Male	brain
31	chr19:38039800-38042800	ZNF genes & repeats	Gastric	stomach
32	chr19:38039800-38043000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr19:38040000-38042800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr19:38040000-38042800	ZNF genes & repeats	Colonic Mucosa	Colon
35	chr19:38040200-38042800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chr19:38040200-38043200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
37	chr19:38040400-38042200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
38	chr19:38040400-38042800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
39	chr19:38040600-38042600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
40	chr19:38040600-38042800	ZNF genes & repeats	Spleen	Spleen
41	chr19:38040600-38043000	ZNF genes & repeats	Fetal Stomach	stomach
42	chr19:38040600-38043200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr19:38040800-38042800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr19:38040800-38042800	ZNF genes & repeats	Fetal Intestine Small	intestine
45	chr19:38040800-38043000	ZNF genes & repeats	Fetal Muscle Leg	muscle
46	chr19:38041000-38042200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
47	chr19:38041000-38042800	ZNF genes & repeats	Placenta	Placenta
48	chr19:38041000-38043000	ZNF genes & repeats	NH-A	brain
49	chr19:38041200-38042000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr19:38041200-38042200	ZNF genes & repeats	Fetal Thymus	thymus

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