Variant report

Variant	rs73932922
Chromosome Location	chr19:38110449-38110450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56065431	1.00[AFR][1000 genomes]
rs58208767	1.00[AFR][1000 genomes]
rs73930980	1.00[AFR][1000 genomes]
rs73930981	1.00[AFR][1000 genomes]
rs73932908	1.00[AFR][1000 genomes]
rs73932910	1.00[AFR][1000 genomes]
rs73932913	1.00[AFR][1000 genomes]
rs73932916	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38105000-38112600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr19:38105000-38116000	Weak transcription	Right Ventricle	heart
3	chr19:38105200-38115000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr19:38107800-38110600	ZNF genes & repeats	Liver	Liver
5	chr19:38108800-38110800	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:38109000-38110800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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