Variant report

Variant	rs56065431
Chromosome Location	chr19:37908137-37908138
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58208767	1.00[AFR][1000 genomes]
rs73930968	1.00[AFR][1000 genomes]
rs73930969	1.00[AFR][1000 genomes]
rs73930971	1.00[AFR][1000 genomes]
rs73930980	1.00[AFR][1000 genomes]
rs73930981	1.00[AFR][1000 genomes]
rs73932908	1.00[AFR][1000 genomes]
rs73932910	1.00[AFR][1000 genomes]
rs73932913	1.00[AFR][1000 genomes]
rs73932916	1.00[AFR][1000 genomes]
rs73932922	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv579465	chr19:37868552-37917692	ZNF genes & repeats Strong transcription Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv963044	chr19:37893588-37916743	ZNF genes & repeats Weak transcription Strong transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37910000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr19:37898000-37910400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37898000-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
5	chr19:37899200-37918800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:37900200-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr19:37902400-37910000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr19:37903000-37908600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr19:37903000-37910200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
10	chr19:37903000-37910200	ZNF genes & repeats	Dnd41	blood
11	chr19:37903200-37925000	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr19:37903200-37927200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr19:37903200-37936600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:37903400-37936400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
15	chr19:37904400-37909200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
16	chr19:37905200-37913000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr19:37906400-37908800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
18	chr19:37906400-37910000	ZNF genes & repeats	Brain Hippocampus Middle	brain
19	chr19:37906400-37913000	ZNF genes & repeats	Aorta	Aorta
20	chr19:37906400-37914000	ZNF genes & repeats	Left Ventricle	heart
21	chr19:37906600-37908600	ZNF genes & repeats	Thymus	Thymus
22	chr19:37906600-37913800	ZNF genes & repeats	Ovary	ovary
23	chr19:37906600-37913800	ZNF genes & repeats	Psoas Muscle	Psoas
24	chr19:37906800-37908400	ZNF genes & repeats	Brain Angular Gyrus	brain
25	chr19:37906800-37908600	ZNF genes & repeats	Colon Smooth Muscle	Colon
26	chr19:37906800-37908600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
27	chr19:37906800-37908800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr19:37906800-37909000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr19:37906800-37909000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
30	chr19:37906800-37910000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
31	chr19:37906800-37910000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
32	chr19:37906800-37910000	ZNF genes & repeats	Brain Substantia Nigra	brain
33	chr19:37906800-37910600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr19:37906800-37915400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr19:37906800-37918000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr19:37906800-37927000	ZNF genes & repeats	Fetal Brain Female	brain
37	chr19:37906800-37936600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
38	chr19:37907000-37908200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
39	chr19:37907000-37908200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
40	chr19:37907000-37908600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr19:37907000-37910200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
42	chr19:37907000-37910400	ZNF genes & repeats	Primary B cells from cord blood	blood
43	chr19:37907400-37908400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
44	chr19:37907400-37909800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr19:37907600-37908400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
46	chr19:37907600-37908400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
47	chr19:37907600-37908600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr19:37907600-37909800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
49	chr19:37907600-37910000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
50	chr19:37907600-37910000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain

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