Variant report

Variant	rs73931634
Chromosome Location	chr19:37094206-37094207
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55885724	1.00[AFR][1000 genomes]
rs55981753	1.00[AFR][1000 genomes]
rs56836606	1.00[AFR][1000 genomes]
rs57422489	1.00[AFR][1000 genomes]
rs57586526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57678022	1.00[AFR][1000 genomes]
rs58078073	1.00[AFR][1000 genomes]
rs58361065	0.83[AFR][1000 genomes]
rs58403474	1.00[AFR][1000 genomes]
rs59329149	0.83[AFR][1000 genomes]
rs60132516	1.00[AFR][1000 genomes]
rs60808598	1.00[AFR][1000 genomes]
rs61082544	1.00[AFR][1000 genomes]
rs61481244	1.00[AFR][1000 genomes]
rs73929009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73929011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73929123	1.00[AFR][1000 genomes]
rs73929124	1.00[AFR][1000 genomes]
rs73929127	1.00[AFR][1000 genomes]
rs73929170	1.00[AFR][1000 genomes]
rs73929171	1.00[AFR][1000 genomes]
rs73929178	1.00[AFR][1000 genomes]
rs73931028	1.00[AFR][1000 genomes]
rs73931029	1.00[AFR][1000 genomes]
rs73931030	1.00[AFR][1000 genomes]
rs73931036	1.00[AFR][1000 genomes]
rs73931037	1.00[AFR][1000 genomes]
rs73931038	1.00[AFR][1000 genomes]
rs73931040	1.00[AFR][1000 genomes]
rs73931626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73931627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73931629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73931636	1.00[AFR][1000 genomes]
rs73931639	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3434386	chr19:37073454-37114509	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37065600-37095400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:37070000-37095400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:37079800-37095200	Weak transcription	NH-A	brain
4	chr19:37080200-37095200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr19:37080400-37095000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr19:37080400-37095000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr19:37080400-37095000	Weak transcription	Fetal Muscle Leg	muscle
8	chr19:37080600-37094600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr19:37080600-37095200	Weak transcription	Right Ventricle	heart
10	chr19:37080600-37095200	Weak transcription	HSMMtube	muscle
11	chr19:37080800-37095000	Weak transcription	Brain Hippocampus Middle	brain
12	chr19:37080800-37095200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr19:37080800-37095200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr19:37080800-37095200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr19:37081200-37095000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr19:37081200-37095200	Weak transcription	Left Ventricle	heart
17	chr19:37082200-37095200	Weak transcription	Fetal Lung	lung
18	chr19:37083800-37094400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr19:37085400-37095000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr19:37085400-37095000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr19:37085600-37095000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr19:37085600-37095200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr19:37086400-37095000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr19:37087600-37095000	Weak transcription	Fetal Stomach	stomach
25	chr19:37087600-37095200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr19:37088600-37095200	Weak transcription	HSMM	muscle
27	chr19:37088600-37095400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr19:37089400-37094600	Weak transcription	Brain Germinal Matrix	brain
29	chr19:37090000-37095400	Weak transcription	Esophagus	oesophagus
30	chr19:37090800-37095200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr19:37091200-37094400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr19:37091200-37095000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr19:37092000-37095000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr19:37092000-37095200	Weak transcription	Fetal Thymus	thymus
35	chr19:37092400-37095000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr19:37093400-37095000	Weak transcription	Thymus	Thymus
37	chr19:37093600-37094600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr19:37093800-37094400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr19:37093800-37094400	Enhancers	Dnd41	blood
40	chr19:37093800-37095000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr19:37094000-37094800	Weak transcription	Fetal Brain Male	brain
42	chr19:37094000-37095200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr19:37094000-37097200	ZNF genes & repeats	Liver	Liver
44	chr19:37094200-37094400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr19:37094200-37094600	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr19:37094200-37095000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr19:37094200-37095200	Enhancers	Primary T cells from cord blood	blood
48	chr19:37094200-37095200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr19:37094200-37095200	Enhancers	Primary T helper cells PMA-I stimulated	--

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