The 2.0 version of rSNPBase

Variant report

Variant rs73940335
Chromosome Location chr2:56114772-56114773
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:56094800-56116200 Weak transcription Spleen Spleen
2 chr2:56104600-56115000 Weak transcription Skeletal Muscle Female skeletal muscle
3 chr2:56107800-56116000 Weak transcription Placenta Amnion Placenta Amnion
4 chr2:56108400-56115000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr2:56108400-56115200 Weak transcription Fetal Kidney kidney
6 chr2:56108400-56116000 Weak transcription Lung lung
7 chr2:56108800-56115000 Weak transcription Gastric stomach
8 chr2:56108800-56116200 Weak transcription Brain Anterior Caudate brain
9 chr2:56109600-56115000 Enhancers Hela-S3 cervix
10 chr2:56109800-56120000 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr2:56110000-56117200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr2:56110200-56116600 Enhancers NH-A brain
13 chr2:56110400-56116600 Enhancers Muscle Satellite Cultured Cells --
14 chr2:56110400-56116600 Enhancers NHLF lung
15 chr2:56110400-56116800 Enhancers NHDF-Ad bronchial
16 chr2:56111200-56116000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr2:56112000-56116000 Genic enhancers HUVEC blood vessel
18 chr2:56112200-56116600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr2:56112200-56116600 Enhancers HMEC breast
20 chr2:56112400-56114800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr2:56112400-56115800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr2:56112600-56115000 Weak transcription Aorta Aorta
23 chr2:56112600-56115000 Enhancers Osteobl bone
24 chr2:56112800-56115000 Enhancers HSMM muscle
25 chr2:56112800-56115400 Enhancers Fetal Lung lung
26 chr2:56113000-56115000 Weak transcription Ovary ovary
27 chr2:56113000-56115000 Weak transcription Pancreas Pancrea
28 chr2:56113000-56115000 Weak transcription Right Atrium heart
29 chr2:56113000-56115800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr2:56113000-56116000 Weak transcription Placenta Placenta
31 chr2:56113200-56114800 Enhancers NHEK skin
32 chr2:56113200-56115000 Weak transcription Stomach Smooth Muscle stomach
33 chr2:56113400-56115000 Weak transcription HSMMtube muscle
34 chr2:56113400-56116000 Enhancers A549 lung
35 chr2:56113600-56115000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr2:56113600-56116600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
37 chr2:56113800-56115600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr2:56113800-56116000 Enhancers Breast Myoepithelial Primary Cells Breast
39 chr2:56114000-56116000 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr2:56114000-56116600 Enhancers Adipose Nuclei Adipose
41 chr2:56114200-56115400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr2:56114400-56115000 Enhancers Brain Substantia Nigra brain
43 chr2:56114400-56115400 Enhancers Brain Germinal Matrix brain
44 chr2:56114400-56115600 Enhancers Cortex derived primary cultured neurospheres brain
45 chr2:56114400-56116200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
46 chr2:56114400-56116400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr2:56114400-56116400 Enhancers Brain Cingulate Gyrus brain
48 chr2:56114400-56116600 Enhancers Brain Hippocampus Middle brain
49 chr2:56114600-56115200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015