Variant report

Variant	rs73968024
Chromosome Location	chr2:160961252-160961253
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:160953931..160959530-chr2:160960677..160963747,5	MCF-7	breast:
2	chr2:160954217..160956346-chr2:160959486..160961538,2	MCF-7	breast:

rs_ID	r²[population]
rs11890990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2667034	1.00[AMR][1000 genomes]
rs56082404	0.99[AFR][1000 genomes]
rs59101427	1.00[AMR][1000 genomes]
rs6715928	1.00[AMR][1000 genomes]
rs6724949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73967991	1.00[AMR][1000 genomes]
rs73968013	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73968047	0.83[AFR][1000 genomes]
rs7602804	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs925408	1.00[AMR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160950800-160967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:160953200-160970800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:160954600-160970800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr2:160954600-160993000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:160954800-160963800	Weak transcription	Fetal Intestine Large	intestine
6	chr2:160954800-160966200	Weak transcription	Fetal Intestine Small	intestine
7	chr2:160955400-160965000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:160955800-160968800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr2:160956200-160965600	Strong transcription	HMEC	breast
10	chr2:160957000-160970200	Weak transcription	Pancreas	Pancrea
11	chr2:160957400-160981200	Weak transcription	Lung	lung
12	chr2:160958400-160965200	Strong transcription	NHEK	skin
13	chr2:160959200-160963800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr2:160959200-161004200	Weak transcription	Gastric	stomach
15	chr2:160959400-160962800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr2:160959400-160985200	Weak transcription	Esophagus	oesophagus
17	chr2:160959400-161032800	Weak transcription	Psoas Muscle	Psoas
18	chr2:160959800-160965800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:160960000-160966400	Weak transcription	HSMMtube	muscle
20	chr2:160960400-160965600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:160960800-160961600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:160960800-160962000	Weak transcription	HSMM	muscle
23	chr2:160960800-160964600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:160961000-160965600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr2:160961200-160962200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links