Variant report

Variant	rs925408
Chromosome Location	chr2:160919208-160919209
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr2:160918897-160919330	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr2:160918896-160919513	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr2:160919020-160919342	A549	lung:	n/a	n/a
4	POLR2A	chr2:160918780-160919461	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr2:160918830-160919307	HUVEC	blood vessel:	n/a	n/a
6	ZNF143	chr2:160918737-160919532	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr2:160918950-160919502	MCF-7	breast:	n/a	n/a
8	POLR2A	chr2:160919041-160919471	MCF-7	breast:	n/a	n/a
9	FOXA2	chr2:160919124-160919692	A549	lung:	n/a	n/a
10	TEAD4	chr2:160918942-160919417	ECC-1	luminal epithelium:	n/a	n/a
11	CTCF	chr2:160919140-160919290	HUVEC	blood vessel:	n/a	n/a
12	POLR2A	chr2:160918719-160919580	HUVEC	blood vessel:	n/a	n/a
13	POLR2A	chr2:160919055-160919467	MCF-7	breast:	n/a	n/a
14	SP1	chr2:160918972-160919514	A549	lung:	n/a	chr2:160919035-160919049 chr2:160919035-160919045 chr2:160919162-160919174 chr2:160919184-160919198 chr2:160919036-160919045 chr2:160919035-160919045 chr2:160919034-160919046 chr2:160919190-160919204 chr2:160919034-160919046 chr2:160919163-160919173 chr2:160919163-160919173 chr2:160919035-160919044
15	POLR2A	chr2:160918846-160919465	A549	lung:	n/a	n/a
16	TBP	chr2:160919187-160919573	H1-hESC	embryonic stem cell:	n/a	n/a
17	GATA3	chr2:160919020-160919282	T-47D	breast:	n/a	n/a
18	POLR2A	chr2:160918827-160919525	MCF10A-Er-Src	breast:	n/a	n/a
19	POLR2A	chr2:160919006-160919375	A549	lung:	n/a	n/a
20	SIN3AK20	chr2:160919146-160919485	A549	lung:	n/a	n/a
21	POLR2A	chr2:160918898-160919502	MCF10A-Er-Src	breast:	n/a	n/a
22	POLR2A	chr2:160918879-160919409	ECC-1	luminal epithelium:	n/a	n/a
23	ZBTB7A	chr2:160918439-160919487	ECC-1	luminal epithelium:	n/a	chr2:160918726-160918733
24	SP1	chr2:160918935-160919558	A549	lung:	n/a	chr2:160919035-160919049 chr2:160919035-160919045 chr2:160919162-160919174 chr2:160919184-160919198 chr2:160919036-160919045 chr2:160919035-160919045 chr2:160919034-160919046 chr2:160919190-160919204 chr2:160919034-160919046 chr2:160919163-160919173 chr2:160919163-160919173 chr2:160919035-160919044
25	TEAD4	chr2:160919011-160919443	H1-hESC	embryonic stem cell:	n/a	n/a
26	MAX	chr2:160919000-160919518	A549	lung:	n/a	n/a
27	POLR2A	chr2:160918859-160919538	ProgFib	skin:	n/a	n/a
28	POLR2A	chr2:160918907-160919630	H1-hESC	embryonic stem cell:	n/a	n/a
29	SIN3A	chr2:160919003-160919668	H1-hESC	embryonic stem cell:	n/a	n/a
30	TEAD4	chr2:160918965-160919514	ECC-1	luminal epithelium:	n/a	n/a
31	MAZ	chr2:160918546-160919930	IMR90	lung:	n/a	n/a
32	POLR2A	chr2:160919022-160919369	Gliobla	brain:	n/a	n/a
33	SIN3AK20	chr2:160918939-160919449	PANC-1	pancreas:	n/a	n/a
34	CHD2	chr2:160918926-160919477	H1-hESC	embryonic stem cell:	n/a	chr2:160919029-160919039
35	POLR2A	chr2:160919010-160919477	H1-hESC	embryonic stem cell:	n/a	n/a
36	MAX	chr2:160918696-160919654	A549	lung:	n/a	n/a
37	FOXA2	chr2:160919156-160919525	A549	lung:	n/a	n/a
38	POLR2A	chr2:160919156-160919345	H1-hESC	embryonic stem cell:	n/a	n/a
39	POLR2A	chr2:160918791-160919369	HUVEC	blood vessel:	n/a	n/a
40	ZBTB7A	chr2:160918527-160919412	ECC-1	luminal epithelium:	n/a	chr2:160918726-160918733
41	POLR2A	chr2:160919163-160919348	A549	lung:	n/a	n/a
42	TAF1	chr2:160919030-160919514	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr2:160919042-160919416	A549	lung:	n/a	n/a
44	TEAD4	chr2:160919051-160919505	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr2:160918732-160919550	HUVEC	blood vessel:	n/a	n/a
46	TCF12	chr2:160918972-160919751	A549	lung:	n/a	chr2:160919450-160919460

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:160919162-160919212	HPAEpiC	pulmonary alveolar:	n/a
2	chr2:160919162-160919212	HUVEC	blood vessel:	n/a
3	chr2:160919162-160919212	SK-N-MC	brain:	n/a
4	chr2:160919162-160919212	NHDF-neo	bronchial:	n/a
5	chr2:160919162-160919212	MCF10A-Er-Src	breast:	n/a
6	chr2:160919162-160919212	AoSMC	blood vessel:	n/a
7	chr2:160919162-160919212	HepG2	liver:	n/a
8	chr2:160919162-160919212	AG09319	gingival:	n/a
9	chr2:160919162-160919212	GM06990	blood:	n/a
10	chr2:160919162-160919212	Caco-2	colon:	n/a
11	chr2:160919162-160919212	BE2_C	brain:	n/a
12	chr2:160919162-160919212	ProgFib	skin:	n/a
13	chr2:160919162-160919212	PrEC	prostate:	n/a
14	chr2:160919162-160919212	K562	blood:	n/a
15	chr2:160919162-160919212	MCF-7	breast:	n/a
16	chr2:160919162-160919212	GM12891	blood:	n/a
17	chr2:160919162-160919212	HCPEpiC	choroid plexus:	n/a
18	chr2:160919162-160919212	HMEC	breast:	n/a
19	chr2:160919162-160919212	SK-N-SH	brain:	n/a
20	chr2:160919162-160919212	NB4	blood:	n/a
21	chr2:160919162-160919212	HRE	kidney:	n/a
22	chr2:160919162-160919212	HAEpiC	amniotic membrane:	n/a
23	chr2:160919162-160919212	LNCaP	prostate:	n/a
24	chr2:160919162-160919212	SAEC	small airway:	n/a
25	chr2:160919162-160919212	ovcar-3	ovarian:	n/a
26	chr2:160919162-160919212	NT2-D1	testis:	n/a
27	chr2:160919162-160919212	Hepatocyte	liver:	n/a
28	chr2:160919162-160919212	U87	brain:	n/a
29	chr2:160919162-160919212	HRPEpiC	eye:	n/a
30	chr2:160919162-160919212	NHBE	bronchial:	n/a
31	chr2:160919162-160919212	T-47D	breast:	n/a
32	chr2:160919162-160919212	IMR90	lung:	fetal
33	chr2:160919162-160919212	HIPEpiC	eye:	n/a
34	chr2:160919162-160919212	ECC-1	luminal epithelium:	n/a
35	chr2:160919162-160919212	AG09309	skin:	n/a
36	chr2:160919162-160919212	AG04450	lung:	fetal
37	chr2:160919162-160919212	Jurkat	blood:	n/a
38	chr2:160919162-160919212	AG04449	skin:	fetal
39	chr2:160919162-160919212	GM12878	blood:	n/a
40	chr2:160919162-160919212	HEEpiC	esophagus:	n/a
41	chr2:160919162-160919212	PFSK-1	brain:	n/a
42	chr2:160919162-160919212	HCT-116	colon:	n/a
43	chr2:160919162-160919212	A549	lung:	n/a
44	chr2:160919162-160919212	GM19239	blood:	n/a
45	chr2:160919162-160919212	PANC-1	pancreas:	n/a
46	chr2:160919162-160919212	AG10803	skin:	n/a
47	chr2:160919162-160919212	SKMC	muscle:	n/a
48	chr2:160919162-160919212	HNPCEpiC	eye:	n/a
49	chr2:160919162-160919212	RPTEC	kidney:	n/a
50	chr2:160919162-160919212	NH-A	brain:	n/a

Variant related genes	Relation type
PLA2R1	TF binding region
PLA2R1	CpG island

rs_ID	r²[population]
rs11890990	1.00[AMR][1000 genomes]
rs2667034	1.00[AMR][1000 genomes]
rs59101427	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6715928	1.00[AMR][1000 genomes]
rs6724949	1.00[AMR][1000 genomes]
rs73967991	1.00[AMR][1000 genomes]
rs73968013	1.00[AMR][1000 genomes]
rs73968024	1.00[AMR][1000 genomes]
rs7602804	1.00[AMR][1000 genomes]

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160916800-160919600	Active TSS	Fetal Kidney	kidney
2	chr2:160917400-160919400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:160917800-160919400	Active TSS	Stomach Smooth Muscle	stomach
4	chr2:160917800-160919600	Active TSS	Rectal Smooth Muscle	rectum
5	chr2:160918000-160919400	Active TSS	Fetal Intestine Small	intestine
6	chr2:160918000-160919400	Bivalent/Poised TSS	Fetal Stomach	stomach
7	chr2:160918000-160919400	Active TSS	Rectal Mucosa Donor 31	rectum
8	chr2:160918000-160919400	Active TSS	HSMMtube	muscle
9	chr2:160918000-160919600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:160918000-160919600	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr2:160918000-160919600	Active TSS	NHDF-Ad	bronchial
12	chr2:160918000-160919800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:160918000-160919800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:160918200-160919400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:160918200-160919400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr2:160918200-160919400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:160918200-160919400	Active TSS	Duodenum Mucosa	Duodenum
18	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr2:160918200-160919600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
22	chr2:160918200-160919600	Active TSS	Esophagus	oesophagus
23	chr2:160918200-160919600	Active TSS	Spleen	Spleen
24	chr2:160918200-160919600	Active TSS	A549	lung
25	chr2:160918200-160919600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
26	chr2:160918200-160919600	Active TSS	NHLF	lung
27	chr2:160918200-160919800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
28	chr2:160918200-160919800	Active TSS	H9 Cell Line	embryonic stem cell
29	chr2:160918200-160919800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr2:160918200-160919800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr2:160918200-160919800	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr2:160918200-160919800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr2:160918200-160919800	Active TSS	Aorta	Aorta
34	chr2:160918200-160919800	Active TSS	Brain Angular Gyrus	brain
35	chr2:160918200-160919800	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr2:160918200-160919800	Active TSS	Ovary	ovary
37	chr2:160918200-160920000	Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr2:160918400-160919400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr2:160918400-160919400	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr2:160918400-160919400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
41	chr2:160918400-160919400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr2:160918400-160919400	Active TSS	Colon Smooth Muscle	Colon
43	chr2:160918400-160919400	Active TSS	Fetal Intestine Large	intestine
44	chr2:160918400-160919400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
45	chr2:160918400-160919400	Active TSS	Gastric	stomach
46	chr2:160918400-160919400	Active TSS	Psoas Muscle	Psoas
47	chr2:160918400-160919400	Active TSS	Small Intestine	intestine
48	chr2:160918400-160919600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr2:160918400-160919600	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr2:160918400-160919600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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