Variant report

Variant	rs73977997
Chromosome Location	chr17:15213412-15213413
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10468477	1.00[EUR][1000 genomes]
rs16951111	1.00[EUR][1000 genomes]
rs16951173	1.00[EUR][1000 genomes]
rs16951182	1.00[EUR][1000 genomes]
rs16951185	1.00[EUR][1000 genomes]
rs16951193	1.00[EUR][1000 genomes]
rs16951242	1.00[EUR][1000 genomes]
rs16951244	1.00[EUR][1000 genomes]
rs4791616	1.00[EUR][1000 genomes]
rs4792583	1.00[EUR][1000 genomes]
rs56041344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56396768	1.00[EUR][1000 genomes]
rs57135592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60259810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60339737	1.00[EUR][1000 genomes]
rs60442420	1.00[EUR][1000 genomes]
rs7225695	1.00[EUR][1000 genomes]
rs73977983	1.00[EUR][1000 genomes]
rs73977985	1.00[EUR][1000 genomes]
rs73977987	1.00[EUR][1000 genomes]
rs73977991	1.00[EUR][1000 genomes]
rs73977993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73977994	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73977998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8071793	1.00[EUR][1000 genomes]
rs8076198	1.00[EUR][1000 genomes]
rs9912273	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv907703	chr17:15199907-15370701	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949172	chr17:15206970-15416808	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15209800-15213800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr17:15210200-15213800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr17:15210400-15215400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr17:15210400-15215600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr17:15210400-15216800	Weak transcription	Ovary	ovary
6	chr17:15210600-15215800	Weak transcription	Fetal Intestine Small	intestine
7	chr17:15211000-15213800	Enhancers	Colon Smooth Muscle	Colon
8	chr17:15211800-15213800	Enhancers	Fetal Lung	lung
9	chr17:15212800-15213600	Enhancers	Psoas Muscle	Psoas
10	chr17:15212800-15213800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr17:15213000-15213600	Enhancers	Fetal Heart	heart
12	chr17:15213200-15213600	Enhancers	Rectal Smooth Muscle	rectum
13	chr17:15213400-15213600	Enhancers	Fetal Kidney	kidney
14	chr17:15213400-15213600	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links