Variant report
Variant | rs60339737 |
---|---|
Chromosome Location | chr17:15101701-15101702 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10468477 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16950902 | 1.00[EUR][1000 genomes] |
rs16951111 | 1.00[EUR][1000 genomes] |
rs16951173 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs16951182 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16951185 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16951193 | 1.00[EUR][1000 genomes] |
rs16951242 | 1.00[EUR][1000 genomes] |
rs16951244 | 1.00[EUR][1000 genomes] |
rs4791616 | 1.00[EUR][1000 genomes] |
rs4792583 | 1.00[EUR][1000 genomes] |
rs56041344 | 1.00[EUR][1000 genomes] |
rs56396768 | 1.00[EUR][1000 genomes] |
rs57135592 | 1.00[EUR][1000 genomes] |
rs60259810 | 1.00[EUR][1000 genomes] |
rs60442420 | 1.00[EUR][1000 genomes] |
rs7225695 | 1.00[EUR][1000 genomes] |
rs73273687 | 1.00[EUR][1000 genomes] |
rs73977983 | 1.00[EUR][1000 genomes] |
rs73977985 | 1.00[EUR][1000 genomes] |
rs73977987 | 1.00[EUR][1000 genomes] |
rs73977991 | 1.00[EUR][1000 genomes] |
rs73977993 | 1.00[EUR][1000 genomes] |
rs73977994 | 1.00[EUR][1000 genomes] |
rs73977997 | 1.00[EUR][1000 genomes] |
rs73977998 | 1.00[EUR][1000 genomes] |
rs8065077 | 1.00[EUR][1000 genomes] |
rs8065452 | 1.00[EUR][1000 genomes] |
rs8071793 | 1.00[EUR][1000 genomes] |
rs8076198 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9912273 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066329 | chr17:14983674-15294071 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
2 | nsv543212 | chr17:14983674-15294071 | Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
3 | nsv492304 | chr17:15043353-15611753 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
4 | nsv916652 | chr17:15093600-15856310 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
5 | nsv978366 | chr17:15100816-15112780 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr17:15101600-15101800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |