Variant report

Variant	rs8065452
Chromosome Location	chr17:14990381-14990382
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10468477	1.00[EUR][1000 genomes]
rs16950902	1.00[EUR][1000 genomes]
rs16951111	1.00[EUR][1000 genomes]
rs16951173	1.00[EUR][1000 genomes]
rs16951182	1.00[EUR][1000 genomes]
rs16951185	1.00[EUR][1000 genomes]
rs16951193	1.00[EUR][1000 genomes]
rs16951242	1.00[EUR][1000 genomes]
rs16951244	1.00[EUR][1000 genomes]
rs4791616	1.00[EUR][1000 genomes]
rs4792583	1.00[EUR][1000 genomes]
rs60339737	1.00[EUR][1000 genomes]
rs7225695	1.00[EUR][1000 genomes]
rs73273687	1.00[EUR][1000 genomes]
rs73977983	1.00[EUR][1000 genomes]
rs8065077	1.00[EUR][1000 genomes]
rs8071793	1.00[EUR][1000 genomes]
rs8076198	1.00[EUR][1000 genomes]
rs9912273	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064686	chr17:14897967-15046005	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:14987000-14991000	Weak transcription	Fetal Muscle Leg	muscle
2	chr17:14987200-14990800	Weak transcription	Left Ventricle	heart
3	chr17:14988600-14991000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr17:14989000-14991600	Enhancers	Brain Germinal Matrix	brain
5	chr17:14989200-14990400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr17:14989200-14990400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:14989200-14990600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr17:14989200-14990800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr17:14989200-14990800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr17:14989200-14991800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr17:14989400-14990400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr17:14989400-14990400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr17:14989400-14990400	Enhancers	Fetal Brain Male	brain
14	chr17:14989400-14990600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr17:14989400-14991400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr17:14989400-14991600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr17:14989800-14990400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr17:14989800-14992400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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