Variant report

Variant	rs16951185
Chromosome Location	chr17:15098156-15098157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10468477	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16950902	1.00[EUR][1000 genomes]
rs16951111	1.00[EUR][1000 genomes]
rs16951173	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16951182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16951193	1.00[EUR][1000 genomes]
rs16951242	1.00[EUR][1000 genomes]
rs16951244	1.00[EUR][1000 genomes]
rs16951335	1.00[MEX][hapmap]
rs4791616	1.00[EUR][1000 genomes]
rs4792583	1.00[EUR][1000 genomes]
rs56041344	1.00[EUR][1000 genomes]
rs56396768	1.00[EUR][1000 genomes]
rs57135592	1.00[EUR][1000 genomes]
rs60259810	1.00[EUR][1000 genomes]
rs60339737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60442420	1.00[EUR][1000 genomes]
rs7225695	1.00[EUR][1000 genomes]
rs73273687	1.00[EUR][1000 genomes]
rs73977983	1.00[EUR][1000 genomes]
rs73977985	1.00[EUR][1000 genomes]
rs73977987	1.00[EUR][1000 genomes]
rs73977991	1.00[EUR][1000 genomes]
rs73977993	1.00[EUR][1000 genomes]
rs73977994	1.00[EUR][1000 genomes]
rs73977997	1.00[EUR][1000 genomes]
rs73977998	1.00[EUR][1000 genomes]
rs8065077	1.00[EUR][1000 genomes]
rs8065452	1.00[EUR][1000 genomes]
rs8071793	1.00[EUR][1000 genomes]
rs8076198	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9912273	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15096400-15098600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:15096600-15098200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:15097400-15098600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr17:15097600-15098800	Enhancers	HSMMtube	muscle
5	chr17:15097600-15099000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr17:15097800-15098200	Enhancers	Psoas Muscle	Psoas
7	chr17:15097800-15098800	Enhancers	Fetal Heart	heart
8	chr17:15097800-15099000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr17:15098000-15098200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links