Variant report

Variant	rs74011166
Chromosome Location	chr15:40789886-40789887
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10152395	1.00[AMR][1000 genomes]
rs16970758	0.80[AFR][1000 genomes]
rs2053974	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35722406	1.00[AMR][1000 genomes]
rs57374749	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57812947	1.00[AFR][1000 genomes]
rs60217610	1.00[AMR][1000 genomes]
rs60464538	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011170	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011171	0.85[AFR][1000 genomes]
rs74011179	1.00[AMR][1000 genomes]
rs74011181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40786200-40791600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:40786200-40792400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:40786400-40791400	Weak transcription	Hela-S3	cervix
4	chr15:40786600-40792800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:40786600-40799200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:40789600-40790200	Enhancers	Fetal Muscle Trunk	muscle
7	chr15:40789800-40790000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links