Variant report

Variant	rs74011171
Chromosome Location	chr15:40807881-40807882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16970758	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2053973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053974	0.82[AFR][1000 genomes]
rs56046472	1.00[ASN][1000 genomes]
rs57149276	0.94[ASN][1000 genomes]
rs57374749	0.84[AFR][1000 genomes]
rs57812947	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60464538	0.85[AFR][1000 genomes]
rs73389048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74011165	0.85[AFR][1000 genomes]
rs74011166	0.85[AFR][1000 genomes]
rs74011170	0.86[AFR][1000 genomes]
rs74011179	0.92[AFR][1000 genomes]
rs74011181	0.88[AFR][1000 genomes]
rs8042419	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40804400-40812200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr15:40804400-40812200	Weak transcription	Pancreas	Pancrea
3	chr15:40804400-40821000	Weak transcription	Right Atrium	heart
4	chr15:40805000-40812200	Weak transcription	HMEC	breast
5	chr15:40805200-40812200	Weak transcription	Fetal Stomach	stomach
6	chr15:40805200-40828200	Weak transcription	Placenta	Placenta
7	chr15:40805200-40833000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:40806200-40812200	Weak transcription	K562	blood
9	chr15:40807600-40808000	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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