Variant report

Variant	rs74011179
Chromosome Location	chr15:40830697-40830698
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40825965..40829345-chr15:40829678..40833688,6	K562	blood:
2	chr15:40825263..40828833-chr15:40829678..40833530,4	K562	blood:
3	chr15:40830175..40831767-chr15:40834513..40836446,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10152395	1.00[AMR][1000 genomes]
rs16970758	0.97[AFR][1000 genomes]
rs2053974	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35722406	1.00[AMR][1000 genomes]
rs57374749	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60217610	1.00[AMR][1000 genomes]
rs60464538	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74011165	1.00[AMR][1000 genomes]
rs74011166	1.00[AMR][1000 genomes]
rs74011170	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74011171	0.92[AFR][1000 genomes]
rs74011181	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40805200-40833000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:40812400-40831000	Weak transcription	Thymus	Thymus
3	chr15:40812400-40837800	Weak transcription	Lung	lung
4	chr15:40812600-40831400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:40812600-40840600	Weak transcription	Hela-S3	cervix
6	chr15:40816800-40835000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:40816800-40845600	Weak transcription	Ovary	ovary
8	chr15:40819200-40831200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:40819400-40831200	Weak transcription	Gastric	stomach
10	chr15:40819600-40845000	Weak transcription	Pancreas	Pancrea
11	chr15:40820800-40833800	Weak transcription	K562	blood
12	chr15:40821400-40836800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:40821400-40848000	Weak transcription	Brain Anterior Caudate	brain
14	chr15:40821800-40840400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:40821800-40856400	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:40822600-40831400	Weak transcription	Aorta	Aorta
17	chr15:40822600-40856400	Weak transcription	Small Intestine	intestine
18	chr15:40822800-40831200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:40823200-40839600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:40823800-40841800	Weak transcription	Brain Substantia Nigra	brain
21	chr15:40824800-40842600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:40825000-40836200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:40825600-40839400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:40825600-40840000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:40825800-40839200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:40825800-40839600	Weak transcription	NHEK	skin
27	chr15:40826200-40831400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:40826600-40831200	Weak transcription	Adipose Nuclei	Adipose
29	chr15:40827000-40831400	Strong transcription	Primary B cells from cord blood	blood
30	chr15:40827200-40831200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr15:40827200-40831600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:40827200-40833000	Weak transcription	GM12878-XiMat	blood
33	chr15:40827600-40842000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr15:40827800-40835400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr15:40827800-40839200	Weak transcription	Fetal Thymus	thymus
36	chr15:40828000-40831400	Enhancers	Fetal Muscle Leg	muscle
37	chr15:40828000-40836200	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr15:40828000-40856600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:40828200-40833400	Strong transcription	Spleen	Spleen
40	chr15:40828400-40839200	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:40828600-40839400	Weak transcription	HMEC	breast
42	chr15:40828600-40841600	Weak transcription	Colonic Mucosa	Colon
43	chr15:40828800-40832600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:40828800-40839200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:40828800-40839200	Weak transcription	Liver	Liver
46	chr15:40828800-40839200	Weak transcription	Esophagus	oesophagus
47	chr15:40828800-40839400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:40829000-40832400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:40829000-40832400	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr15:40829000-40841400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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