Variant report

Variant	rs74015895
Chromosome Location	chr15:58625567-58625568
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:58623145-58625738	HepG2	liver:	n/a	n/a
2	SIX5	chr15:58623759-58625939	A549	lung:	n/a	chr15:58624197-58624206
3	JUN	chr15:58625257-58625582	HepG2	liver:	n/a	chr15:58625437-58625445 chr15:58625437-58625444 chr15:58625371-58625384
4	FOXA1	chr15:58625215-58625634	T-47D	breast:	n/a	chr15:58625409-58625424
5	NR2F2	chr15:58624982-58625742	MCF-7	breast:	n/a	n/a
6	MAFK	chr15:58625406-58625616	K562	blood:	n/a	n/a
7	NR3C1	chr15:58625007-58625790	A549	lung:	n/a	chr15:58625173-58625186
8	FOXA1	chr15:58625118-58625590	T-47D	breast:	n/a	chr15:58625409-58625424
9	TBP	chr15:58624328-58625689	GM12878	blood:	n/a	n/a
10	RAD21	chr15:58624990-58625744	A549	lung:	n/a	n/a
11	USF1	chr15:58625208-58625589	A549	lung:	n/a	n/a
12	JUND	chr15:58623659-58625605	K562	blood:	n/a	chr15:58624540-58624549 chr15:58625437-58625445 chr15:58625437-58625444 chr15:58624538-58624550 chr15:58624538-58624549 chr15:58624543-58624551
13	ETS1	chr15:58625089-58625591	A549	lung:	n/a	chr15:58625316-58625323
14	GATA3	chr15:58624139-58625723	MCF-7	breast:	n/a	chr15:58624584-58624591
15	JUND	chr15:58625222-58625578	HepG2	liver:	n/a	chr15:58625437-58625445 chr15:58625437-58625444
16	EP300	chr15:58623741-58626031	A549	lung:	n/a	chr15:58625410-58625420 chr15:58625314-58625323 chr15:58623911-58623925 chr15:58623868-58623882
17	TEAD4	chr15:58624042-58625792	A549	lung:	n/a	n/a
18	FOXA1	chr15:58625145-58625696	HepG2	liver:	n/a	chr15:58625409-58625424
19	CEBPB	chr15:58625098-58625725	A549	lung:	n/a	n/a
20	NR3C1	chr15:58625109-58625734	A549	lung:	n/a	chr15:58625173-58625186
21	RAD21	chr15:58623989-58625691	IMR90	lung:	n/a	chr15:58624698-58624711 chr15:58624621-58624633
22	EP300	chr15:58624235-58625592	GM12878	blood:	n/a	chr15:58625410-58625420 chr15:58625314-58625323
23	FOXA2	chr15:58624029-58625769	A549	lung:	n/a	n/a
24	MAZ	chr15:58624158-58625628	HepG2	liver:	n/a	n/a
25	EBF1	chr15:58624324-58625579	GM12878	blood:	n/a	n/a
26	SP1	chr15:58623796-58625954	A549	lung:	n/a	chr15:58624213-58624227 chr15:58625601-58625608
27	CEBPB	chr15:58623524-58625784	A549	lung:	n/a	chr15:58623913-58623926
28	TCF12	chr15:58624048-58625666	A549	lung:	n/a	chr15:58625411-58625420
29	TEAD4	chr15:58624938-58625617	A549	lung:	n/a	n/a
30	GATA3	chr15:58624143-58625804	A549	lung:	n/a	chr15:58624584-58624591
31	FOXA1	chr15:58625166-58625698	HepG2	liver:	n/a	chr15:58625409-58625424
32	SP1	chr15:58623656-58626204	A549	lung:	n/a	chr15:58624213-58624227 chr15:58625601-58625608
33	USF1	chr15:58625087-58625618	A549	lung:	n/a	n/a
34	REST	chr15:58624851-58625685	A549	lung:	n/a	n/a
35	RAD21	chr15:58624075-58625809	A549	lung:	n/a	chr15:58624698-58624711 chr15:58624621-58624633
36	EP300	chr15:58625189-58625668	HepG2	liver:	n/a	chr15:58625410-58625420 chr15:58625314-58625323
37	SIN3AK20	chr15:58625135-58625722	A549	lung:	n/a	n/a
38	BCL3	chr15:58623798-58625792	A549	lung:	n/a	chr15:58624221-58624230
39	SIN3AK20	chr15:58624126-58625718	MCF-7	breast:	n/a	n/a
40	NR2F2	chr15:58625102-58625715	MCF-7	breast:	n/a	n/a
41	FOXA2	chr15:58625206-58625579	HepG2	liver:	n/a	n/a
42	JUND	chr15:58625107-58625707	A549	lung:	n/a	chr15:58625437-58625445 chr15:58625437-58625444
43	MAX	chr15:58624121-58625877	A549	lung:	n/a	chr15:58625830-58625846
44	WRNIP1	chr15:58625504-58625758	GM12878	blood:	n/a	n/a
45	FOSL2	chr15:58625125-58625722	A549	lung:	n/a	chr15:58625437-58625445 chr15:58625437-58625444
46	EP300	chr15:58625066-58625628	MCF-7	breast:	n/a	chr15:58625410-58625420 chr15:58625314-58625323
47	ZBTB33	chr15:58625075-58625723	A549	lung:	n/a	n/a
48	SIN3AK20	chr15:58623938-58625895	A549	lung:	n/a	n/a
49	ATF3	chr15:58624044-58625777	A549	lung:	n/a	n/a
50	GATA3	chr15:58624971-58625779	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:58588436..58590759-chr15:58624393..58625970,2	K562	blood:
2	chr15:58624616..58627086-chr15:58627284..58629454,3	MCF-7	breast:
3	chr15:58622254..58626014-chr15:59062445..59064794,4	K562	blood:
4	chr15:58624557..58626281-chr15:58684257..58686056,2	K562	blood:
5	chr15:58520576..58522119-chr15:58624457..58626342,2	K562	blood:
6	chr15:58615644..58618290-chr15:58625044..58627431,2	K562	blood:
7	chr15:58624699..58626357-chr15:58758259..58760422,2	MCF-7	breast:
8	chr15:58613929..58616800-chr15:58624666..58626264,2	MCF-7	breast:
9	chr15:58624527..58626111-chr15:58750898..58753049,2	K562	blood:
10	chr15:58621217..58623761-chr15:58624859..58627813,2	MCF-7	breast:
11	chr15:58625329..58627247-chr15:58636913..58638829,3	MCF-7	breast:
12	chr15:58625565..58627627-chr15:59040149..59042801,2	MCF-7	breast:
13	chr15:58518633..58520407-chr15:58624416..58626222,2	K562	blood:
14	chr15:58623889..58626326-chr15:58704441..58709164,4	K562	blood:
15	chr15:58518907..58522119-chr15:58624457..58627687,4	K562	blood:
16	chr15:58624606..58626295-chr15:58688208..58690512,2	MCF-7	breast:

Variant related genes	Relation type
ALDH1A2	TF binding region
ENSG00000245975	Chromatin interaction
ENSG00000128918	Chromatin interaction
ENSG00000137845	Chromatin interaction
ENSG00000128923	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12905748	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1444940	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs195566	0.90[EUR][1000 genomes]
rs261281	0.90[EUR][1000 genomes]
rs35837241	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56922332	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71478664	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58622000-58625600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:58622000-58625600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr15:58622000-58625800	Enhancers	Esophagus	oesophagus
4	chr15:58622000-58626000	Enhancers	Fetal Stomach	stomach
5	chr15:58622000-58626000	Enhancers	Left Ventricle	heart
6	chr15:58622000-58626000	Enhancers	Pancreas	Pancrea
7	chr15:58622000-58626000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr15:58622000-58626000	Enhancers	Right Atrium	heart
9	chr15:58622000-58627200	Enhancers	Placenta	Placenta
10	chr15:58622200-58625600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:58622200-58625600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr15:58622200-58625600	Enhancers	Stomach Mucosa	stomach
13	chr15:58622200-58625600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr15:58622200-58625800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:58622200-58625800	Enhancers	Fetal Heart	heart
16	chr15:58622200-58625800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr15:58622200-58626000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr15:58622200-58626000	Enhancers	Fetal Intestine Large	intestine
19	chr15:58622400-58625800	Enhancers	Fetal Intestine Small	intestine
20	chr15:58622400-58625800	Enhancers	Psoas Muscle	Psoas
21	chr15:58622600-58625600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:58622600-58625600	Enhancers	Colon Smooth Muscle	Colon
23	chr15:58622600-58625800	Enhancers	Aorta	Aorta
24	chr15:58622600-58625800	Enhancers	HSMM	muscle
25	chr15:58623000-58625800	Enhancers	HMEC	breast
26	chr15:58623000-58625800	Enhancers	Osteobl	bone
27	chr15:58623200-58626200	Flanking Active TSS	A549	lung
28	chr15:58623400-58625800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:58623600-58625800	Weak transcription	Small Intestine	intestine
30	chr15:58623600-58626000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:58624200-58625800	Enhancers	NH-A	brain
32	chr15:58624200-58626000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:58624200-58626000	Enhancers	Liver	Liver
34	chr15:58624200-58626000	Enhancers	NHLF	lung
35	chr15:58624200-58626200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:58624200-58626200	Enhancers	NHDF-Ad	bronchial
37	chr15:58624400-58626000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:58624400-58626000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:58624400-58626400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr15:58624400-58626600	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr15:58624600-58625600	Enhancers	Primary hematopoietic stem cells	blood
42	chr15:58624600-58626000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:58624600-58626000	Enhancers	Adipose Nuclei	Adipose
44	chr15:58624600-58627800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr15:58624800-58625600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:58624800-58625600	Enhancers	Brain Angular Gyrus	brain
47	chr15:58624800-58625600	Enhancers	Fetal Lung	lung
48	chr15:58624800-58625800	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr15:58624800-58625800	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr15:58624800-58625800	Enhancers	Right Ventricle	heart

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